Evidence map›Paper›PMID 33613843›Full record

ArticleOncotarget2021

High mRNA expression of LY6 gene family is associated with overall survival outcome in pancreatic ductal adenocarcinoma.

Eric Russ, Krithika Bhuvaneshwar, Guisong Wang, Benjamin Jin, Michele M Gage, Subha Madhavan, Yuriy Gusev, Geeta Upadhyay

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Silencing LY6K Suppresses CD44Current issues in molecular biology · 2024
    Article
  4. HumanOncotarget · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Eric RussDepartment of Pathology, Uniformed Services University, Bethesda, MD, USA.
Krithika BhuvaneshwarInnovation Center for Biomedical Informatics, Georgetown University Medical Center, Washington DC, USA.
Guisong WangMurtha Cancer Center/Research Program, Department of Surgery, Uniformed Services University of the Health Sciences, Bethesda, MD, USA.
Benjamin JinDepartment of Pathology, Uniformed Services University, Bethesda, MD, USA.
Michele M GageMurtha Cancer Center/Research Program, Department of Surgery, Uniformed Services University of the Health Sciences, Bethesda, MD, USA.
Subha MadhavanInnovation Center for Biomedical Informatics, Georgetown University Medical Center, Washington DC, USA.
Yuriy GusevInnovation Center for Biomedical Informatics, Georgetown University Medical Center, Washington DC, USA.
Geeta UpadhyayDepartment of Pathology, Uniformed Services University, Bethesda, MD, USA.
Uniformed Services University of the Health Sciences · USGeorgetown University Medical Center · USGeorgetown University · US

Funding

Maternal Morbidity and Mortality: Risk Factors, Early Detection and Personalized InterventionUL1TR001409 · NCATS · GEORGETOWN UNIVERSITY · PI GONDRE-LEWIS, MARJORIE C, MELLMAN, THOMAS A · 2015 to 2024
$37.8M
Role of Ly6K in TGF-beta and immune escape pathways of triple negative breast cancerR01CA227694 · NCI · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI Geeta Upadhyay · 2018 to 2026
$2.4M
Use of Ly6K specific CAR T-cells to treat primary and metastatic triple negative breast cancerR21CA256424 · NCI · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI UPADHYAY, GEETA · 2021 to 2022
$389k
NCATS NIH HHS UL1 TR001409NCI NIH HHS R01 CA227694NCI NIH HHS R21 CA256424
6 · The paper itself

Abstract

Pancreatic cancer ranks one of the worst in overall survival outcome with a 5 year survival rate being less than 10%. Pancreatic cancer faces unique challenges in its diagnosis and treatment, such as the lack of clinically validated biomarkers and the immensely immunosuppressive tumor microenvironment. Recently, the LY6 gene family has received increasing attention for its multi-faceted roles in cancer development, stem cell maintenance, immunomodulation, and association with more aggressive and hard-to-treat cancers. A detailed study of mRNA expression of LY6 gene family and its association with overall survival (OS) outcome in pancreatic cancers is lacking. We used publicly available clinical datasets to analyze the mRNA expression of a set of LY6 genes and its effect on OS outcome in the context of the tumor microenvironment and immunomodulation. We used web-based tools Kaplan-Meier Plotter, cBioPortal, Oncomine and R-programming to analyze copy number alterations, mRNA expression and its association with OS outcome in pancreatic cancer. These analyses demonstrated that high expression of LY6 genes is associated with OS and disease free survival (DFS) outcome. High expression of LY6 genes and their association with OS outcome is dependent on the composition of tumor microenvironment. Considering that LY6 proteins are anchored to the outer cell membrane or secreted, making them readily accessible, these findings highlight the potential of LY6 family members in the future of pancreatic cancer diagnosis and treatment.

Indexed as

immune cellsLY6 genespancreatic cancersurvival outcome

Identifiers

PMID33613843
PMCPMC7869573
OpenAlexW3128947834

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.