Evidence map›Paper›PMID 33609141›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2021

Fine mapping of a thrips resistance QTL in Capsicum and the role of diterpene glycosides in the underlying mechanism.

Pauline van Haperen, Roeland E Voorrips, Martijn van Kaauwen, Henriëtte D L M van Eekelen, Ric C H de Vos, Joop J A van Loon, Ben Vosman

Open access · hybridAbstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Pauline van HaperenPlant Breeding, Wageningen University and Research, P.O. Box 386, 6700 AJ, Wageningen, The Netherlands.
Roeland E VoorripsPlant Breeding, Wageningen University and Research, P.O. Box 386, 6700 AJ, Wageningen, The Netherlands.
Martijn van KaauwenPlant Breeding, Wageningen University and Research, P.O. Box 386, 6700 AJ, Wageningen, The Netherlands.
Henriëtte D L M van EekelenBioscience, Wageningen University and Research, PO Box 16, 6700 AA, Wageningen, The Netherlands.
Ric C H de VosBioscience, Wageningen University and Research, PO Box 16, 6700 AA, Wageningen, The Netherlands.
Joop J A van LoonLaboratory of Entomology, Wageningen University and Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands.
Ben VosmanPlant Breeding, Wageningen University and Research, P.O. Box 386, 6700 AJ, Wageningen, The Netherlands. ben.vosman@wur.nl.ORCID http://orcid.org/0000-0003-4942-8342
Wageningen University & Research · NLGraduate School Experimental Plant Sciences · NLKeyGene (Netherlands) · NL

Funding

BASF Vegetable Seeds TKI-1409-045Bejo Zaden B.V.. TKI-1409-045Ministerie van landbouw (NL) TKI-1409-045
6 · The paper itself

Abstract

key messageA major thrips resistance QTL in Capsicum was fine-mapped to a region of 0.4 Mbp, and a multidisciplinary approach has been used to study putative underlying mechanisms. Resistance to thrips is an important trait for pepper growers. These insects can cause extensive damage to fruits, flowers and leaves on field and greenhouse grown plants worldwide. Two independent studies in Capsicum identified diterpene glycosides as metabolites that are correlated with thrips resistance. In this study, we fine-mapped a previously defined thrips resistance QTL on chromosome 6, to a region of 0.4 Mbp harbouring 15 genes. Two of these 15 candidate genes showed differences in gene expression upon thrips induction, when comparing plants carrying the resistance allele in homozygous state to plants with the susceptibility allele in homozygous state for the QTL region. Three genes, including the two genes that showed difference in gene expression, contained a SNP that was predicted to lead to changes in protein structure. Therefore, these three genes, i.e. an acid phosphatase 1 (APS1), an organic cation/carnitine transporter 7 (OCT7) and an uncharacterized locus LOC107874801, are the most likely candidates for playing a role in thrips resistance and are a first step in elucidating the genetic basis of thrips resistance in Capsicum. In addition, we show that the diterpene glycoside profiles did not differ between plants with the resistance and susceptibility allele for the chromosome 6 QTL, suggesting that these compounds do not play a role in the resistance conferred by the genes located in the major thrips resistance QTL studied.

Indexed as

Quantitative Trait LociAnimalsCapsicumChromosome MappingChromosomes, PlantDisease ResistanceGene Expression Regulation, PlantGenome, PlantGenome-Wide Association StudyGlycosidesHost-Parasite InteractionsPhenotypePlant BreedingPlant DiseasesPlant ProteinsThysanopteraGlycosidesPlant Proteins

Identifiers

PMID33609141
PMCPMC8081677
OpenAlexW3130078223

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.