Evidence map›Paper›PMID 33608006›Full record

ArticleMalaria journal2021

Genomic investigation of atypical malaria cases in Kanel, northern Senegal.

Mouhamad Sy, Aida Sadikh Badiane, Awa Bineta Deme, Amy Gaye, Tolla Ndiaye, Fatou Ba Fall, Katherine J Siddle, Baba Dieye, Yaye Die Ndiaye, Mamadou Alpha Diallo and 12 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Sampling for malaria molecular surveillance.Trends in parasitology · 2023
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 2 countries.

Mouhamad SyLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal. symouhamad92@gmail.com.
Aida Sadikh BadianeLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Awa Bineta DemeLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Amy GayeLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Tolla NdiayeLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Fatou Ba FallSenegal National Malaria Control Programme, Dakar, Senegal.
Katherine J SiddleThe Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Baba DieyeLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Yaye Die NdiayeLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Mamadou Alpha DialloLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Khadim DiongueLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Mame Cheikh SeckLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Ibrahima Mbaye NdiayeLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Moustapha CisséSenegal National Malaria Control Programme, Dakar, Senegal.
Alioune Badara GueyeSenegal National Malaria Control Programme, Dakar, Senegal.
Doudou SèneSenegal National Malaria Control Programme, Dakar, Senegal.
Yakou DieyeMalaria Control and Evaluation Partnership in Africa PATH-MACEPA, Dakar, Senegal.
Tamba SouanéMalaria Control and Evaluation Partnership in Africa PATH-MACEPA, Dakar, Senegal.
Bronwyn MacInnisThe Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Sarah K VolkmanThe Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Dyann F WirthThe Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Daouda NdiayeLaboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.
Cheikh Anta Diop University · SNNational Office for Sanitation of Senegal · SNHôpital Aristide Le Dantec · SNBroad Institute · USHarvard University · US

Funding

Utilize Microbial Metagenomics for Viral Pathogen CharacterizationU54HG007480 · NHGRI · REDEEMER'S UNIVERSITY · PI HAPPI, CHRISTIAN T. · 2017 to 2022
$5.5M
Malaria Genomic Epidemiology for Identifying Sources of Malaria Infection and TransmissionR21AI141843 · NIAID · HARVARD SCHOOL OF PUBLIC HEALTH · PI VOLKMAN, SARAH KAY · 2019 to 2020
$439k
Medical Research Council MR/P028071/1NHGRI NIH HHS U54 HG007480NIAID NIH HHS R21 AI141843
6 · The paper itself

Abstract

backgroundThe diagnosis of malaria cases in regions where the malaria burden has decreased significantly and prevalence is very low is more challenging, in part because of reduced clinical presumption of malaria. The appearance of a cluster of malaria cases with atypical symptoms in Mbounguiel, a village in northern Senegal where malaria transmission is low, in September 2018 exemplifies this scenario. The collaboration between the National Malaria Control Programme (NMCP) at the Senegal Ministry of Health and the Laboratory of Parasitology and Mycology at Cheikh Anta Diop University worked together to evaluate this cluster of malaria cases using molecular and serological tools.

methodsMalaria cases were diagnosed primarily by rapid diagnostic test (RDT), and confirmed by photo-induced electron transfer-polymerase chain reaction (PET-PCR). 24 single nucleotide polymorphisms (SNPs) barcoding was used for Plasmodium falciparum genotyping. Unbiased metagenomic sequencing and Luminex-based multi-pathogen antibody and antigen profiling were used to assess exposure to other pathogens.

resultsNine patients, of 15 suspected cases, were evaluated, and all nine samples were found to be positive for P. falciparum only. The 24 SNPs molecular barcode showed the predominance of polygenomic infections, with identifiable strains being different from one another. All patients tested positive for the P. falciparum antigens. No other pathogenic infection was detected by either the serological panel or metagenomic sequencing.

conclusionsThis work, undertaken locally within Senegal as a collaboration between the NMCP and a research laboratory at University of Cheikh Anta Diop (UCAD) revealed that a cluster of malaria cases were caused by different strains of P. falciparum. The public health response in real time demonstrates the value of local molecular and genomics capacity in affected countries for disease control and elimination.

Indexed as

Genome, ProtozoanAdolescentChildChild, PreschoolFemaleHumansMalaria, FalciparumMalePlasmodium falciparumSenegalYoung AdultGenetic surveillanceInfectious diseaseInvestigationMetagenomic sequencingPlasmodium falciparumSerology

Identifiers

PMID33608006
PMCPMC7893743
OpenAlexW3132067287

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.