Evidence map›Paper›PMID 33606980›Full record

ArticleCell2021

DNA origami signposts for identifying proteins on cell membranes by electron cryotomography.

Emma Silvester, Benjamin Vollmer, Vojtěch Pražák, Daven Vasishtan, Emily A Machala, Catheryne Whittle, Susan Black, Jonathan Bath, Andrew J Turberfield, Kay Grünewald and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 79 citations in OpenAlex.

  1. Review
  2. Article
  3. Cloneable contrast across all biological length scales.Journal of structural biology · 2026
    Article
  4. Article
  5. Article
  6. Molecular tags for electron cryo-tomography.Emerging topics in life sciences · 2025
    Review
  7. Structural glycobiology - from enzymes to organelles.Biochemical Society transactions · 2025
    Review
  8. Review
  9. Laser capture microdissection.Nature reviews. Methods primers · 2025
    Article
  10. Recent advances in correlative cryo-light and electron microscopy.Current opinion in structural biology · 2024
    Review
  11. bioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Piggybacking functionalized DNA nanostructures into live cell nuclei.bioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. Article
  18. High spatial-resolved heat manipulating membrane heterogeneity alters cellular migration and signaling.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Emma SilvesterOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN; Department of Physics, University of Oxford, Clarendon Laboratory, Parks Road, Oxford UK OX1 3PU; Centre for Structural Systems Biology, Heinrich-Pette-Institut, Leibniz-Institut für Experimentelle Virologie, Notkestrasse 85, 22607 Hamburg, Germany.
Benjamin VollmerOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN; Centre for Structural Systems Biology, Heinrich-Pette-Institut, Leibniz-Institut für Experimentelle Virologie, Notkestrasse 85, 22607 Hamburg, Germany.
Vojtěch PražákOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN; Centre for Structural Systems Biology, Heinrich-Pette-Institut, Leibniz-Institut für Experimentelle Virologie, Notkestrasse 85, 22607 Hamburg, Germany.
Daven VasishtanOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN; Centre for Structural Systems Biology, Heinrich-Pette-Institut, Leibniz-Institut für Experimentelle Virologie, Notkestrasse 85, 22607 Hamburg, Germany.
Emily A MachalaOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN.
Catheryne WhittleOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN.
Susan BlackOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN; Centre for Structural Systems Biology, Heinrich-Pette-Institut, Leibniz-Institut für Experimentelle Virologie, Notkestrasse 85, 22607 Hamburg, Germany.
Jonathan BathDepartment of Physics, University of Oxford, Clarendon Laboratory, Parks Road, Oxford UK OX1 3PU.
Andrew J TurberfieldDepartment of Physics, University of Oxford, Clarendon Laboratory, Parks Road, Oxford UK OX1 3PU. Electronic address: andrew.turberfield@physics.ox.ac.uk.
Kay GrünewaldOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN; Centre for Structural Systems Biology, Heinrich-Pette-Institut, Leibniz-Institut für Experimentelle Virologie, Notkestrasse 85, 22607 Hamburg, Germany; Department of Chemistry, University of Hamburg, Martin-Luther-King Platz 6, 20146 Hamburg, Germany. Electronic address: kay.gruenewald@cssb-hamburg.de.
Lindsay A BakerOxford Particle Imaging Centre, Division of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Roosevelt Drive, Oxford UK OX3 7BN; Centre for Structural Systems Biology, Heinrich-Pette-Institut, Leibniz-Institut für Experimentelle Virologie, Notkestrasse 85, 22607 Hamburg, Germany. Electronic address: lindsay@strubi.ox.ac.uk.
Leibniz Institute of Virology (LIV) · DEUniversity of Oxford · GBCentre for Human Genetics · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H000321/1CIHRMedical Research Council MR/R017875/1Wellcome TrustWellcome Trust 107806/Z/15/ZWellcome Trust 209250/Z/17/Z
6 · The paper itself

Abstract

Electron cryotomography (cryoET), an electron cryomicroscopy (cryoEM) modality, has changed our understanding of biological function by revealing the native molecular details of membranes, viruses, and cells. However, identification of individual molecules within tomograms from cryoET is challenging because of sample crowding and low signal-to-noise ratios. Here, we present a tagging strategy for cryoET that precisely identifies individual protein complexes in tomograms without relying on metal clusters. Our method makes use of DNA origami to produce "molecular signposts" that target molecules of interest, here via fluorescent fusion proteins, providing a platform generally applicable to biological surfaces. We demonstrate the specificity of signpost origami tags (SPOTs) in vitro as well as their suitability for cryoET of membrane vesicles, enveloped viruses, and the exterior of intact mammalian cells.

Indexed as

Cryoelectron MicroscopyElectron Microscope TomographyAnimalsAptamers, NucleotideBiophysical PhenomenaCell LineCell MembraneDNAFemaleFluorescenceHumansNanoparticlesAptamers, NucleotideDNAaptamerscellular electron cryotomographycryoEMDNA origamielectron cryomicroscopylabelingmolecular arrowsprotein localisationsignpost origami tagstagging

Identifiers

PMID33606980
PMCPMC7895908
OpenAlexW3131596152

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.