Evidence map›Paper›PMID 33606527›Full record

ArticleJournal of chemical theory and computation2021

Curvature Constrained Splines for DFTB Repulsive Potential Parametrization.

Akshay Krishna Ammothum Kandy, Eddie Wadbro, Bálint Aradi, Peter Broqvist, Jolla Kullgren

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In one paragraph

Article in Journal of chemical theory and computation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. DSKO: Dancing through DFTB Parametrization.Journal of chemical theory and computation · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Akshay Krishna Ammothum KandyDepartment of Chemistry - Ångström Laboratory, Uppsala University, Box 538, 751 21 Uppsala, Sweden.ORCID http://orcid.org/0000-0002-9880-4482
Eddie WadbroDepartment of Computing Science, Umeå University, Umeå SE-901 87, Sweden.
Bálint AradiBremen Center for Computational Materials Science, University of Bremen, Am Fallturm 1, 28359 Bremen, Germany.
Peter BroqvistDepartment of Chemistry - Ångström Laboratory, Uppsala University, Box 538, 751 21 Uppsala, Sweden.ORCID http://orcid.org/0000-0002-9842-4332
Jolla KullgrenDepartment of Chemistry - Ångström Laboratory, Uppsala University, Box 538, 751 21 Uppsala, Sweden.ORCID http://orcid.org/0000-0003-3570-0050

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Curvature Constrained Splines (CCS) methodology has been used for fitting repulsive potentials to be used in SCC-DFTB calculations. The benefit of using CCS is that the actual fitting of the repulsive potential is performed through quadratic programming on a convex objective function. This guarantees a unique (for strictly convex) and optimum two-body repulsive potential in a single shot, thereby making the parametrization process robust, and with minimal human effort. Furthermore, the constraints in CCS give the user control to tune the shape of the repulsive potential based on prior knowledge about the system in question. Herein, we developed the method further with new constraints and the capability to handle sparse data. We used the method to generate accurate repulsive potentials for bulk Si polymorphs and demonstrate that for a given Slater-Koster table, which reproduces the experimental band structure for bulk Si in its ground state, we are unable to find one single two-body repulsive potential that can accurately describe the various bulk polymorphs of silicon in our training set. We further demonstrate that to increase transferability, the repulsive potential needs to be adjusted to account for changes in the chemical environment, here expressed in the form of a coordination number. By training a near-sighted Atomistic Neural Network potential, which includes many-body effects but still essentially within the first-neighbor shell, we can obtain full transferability for SCC-DFTB in terms of describing the energetics of different Si polymorphs.

Identifiers

PMID33606527
PMCPMC8023658

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.