Evidence map›Paper›PMID 33606246›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Exploring Translational Control of Maternal mRNAs in Zebrafish.

Cecilia Lanny Winata, Maciej Łapiński, Hisyam Ismail, Sinnakaruppan Mathavan, Prabha Sampath

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Cecilia Lanny WinataInternational Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland. cwinata@iimcb.gov.pl.
Maciej ŁapińskiInternational Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.
Hisyam IsmailSkin Research Institute of Singapore, Agency for Science Technology and Research, Singapore, Singapore.
Sinnakaruppan MathavanVision Research Foundation, Sankara Nethralaya, Chennai, India.
Prabha SampathSkin Research Institute of Singapore, Agency for Science Technology and Research, Singapore, Singapore.
International Institute of Molecular and Cell Biology · PLAgency for Science, Technology and Research · SGNational University of Singapore · SGSankara Nethralaya · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of translational regulation requires reliable measurement of both mRNA levels and protein synthesis. Cytoplasmic polyadenylation is a prevalent mode of translational regulation during oogenesis and early embryogenesis. Here the length of the poly(A) tail of an mRNA is coupled to its translatability. We describe a protocol to identify translationally regulated genes and measure their translation rate in the early zebrafish embryo using genome-wide polysome profiling. This protocol relies on the isolation of mRNA by means of an rRNA depletion strategy, which avoids capture bias due to short poly(A) tail that can occur when using conventional oligo(dT)-based methods. We also present a simple PCR-based method to measure the poly(A) tail length of selected mRNAs.

Indexed as

AnimalsCytoplasmEmbryonic DevelopmentEmbryo, NonmammalianOocytesOogenesisPoly APolyadenylationProtein BiosynthesisRNA, Messenger, StoredZebrafishPoly ARNA, Messenger, StoredCytoplasmic polyadenylationMaternal RNAPolysome profilingTranslational regulationZebrafish

Identifiers

PMID33606246
OpenAlexW3133215863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.