Evidence map›Paper›PMID 33604853›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Method to Disassemble Spheroids into Core and Rim for Downstream Applications Such as Flow Cytometry, Comet Assay, Transcriptomics, Proteomics, and Lipidomics.

Helle Sedighi Frandsen, Martina Štampar, Joel Mario Vej-Nielsen, Bojana Žegura, Adelina Rogowska-Wrzesinska

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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.3field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Helle Sedighi FrandsenInstitute for Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.
Martina ŠtamparDepartment of Genetic Toxicology and Cancer Biology, National Institute of Biology, Ljubljana, Slovenia.
Joel Mario Vej-NielsenInstitute for Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.
Bojana ŽeguraDepartment of Genetic Toxicology and Cancer Biology, National Institute of Biology, Ljubljana, Slovenia.
Adelina Rogowska-WrzesinskaInstitute for Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark. adelinar@bmb.sdu.dk.
University of Southern Denmark · DKNational Institute of Biology · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cells cultured in a monolayer have been a central tool in molecular and cell biology, toxicology, biochemistry, and so on. Therefore, most methods for adherent cells in cell biology are tailored to this format of cell culturing. Limitations and disadvantages of monolayer cultures, however, have resulted in the ongoing development of advanced cell culturing techniques. One such technique is culturing cells as multicellular spheroids, that had been shown to mimic the physiological conditions found in vivo more accurately. This chapter presents a novel method for separation of the spheroid rim and core in mature spheroids (>21 days) for further analysis using advanced molecular biology techniques such as flow cytometry, viability estimations, comet assay, transcriptomics, proteomics and lipidomic. This fast and gentle disassembly of intact spheroids into rim and core fractions, and further into viable single-cell suspension provides an opportunity to bridge the gap from 3D cell culture to current state-of-the-art analysis methods.

Indexed as

Cell Culture TechniquesComet AssayComputational BiologyFlow CytometryGenomicsHep G2 CellsHumansLipidomicsProteomicsSpheroids, CellularTranscriptome3D cell cultureComet assayFlow cytometryHepG2/C3ALipidomicProteomicsRim and coreSpheroidsTranscriptomics

Identifiers

PMID33604853
OpenAlexW3132129806

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.