Evidence map›Paper›PMID 33604743›Full record

ReviewPlant molecular biology2022

Current status and impending progress for cassava structural genomics.

Jessica B Lyons, Jessen V Bredeson, Ben N Mansfeld, Guillaume Jean Bauchet, Jeffrey Berry, Adam Boyher, Lukas A Mueller, Daniel S Rokhsar, Rebecca S Bart

Erratum issuedAbstract readReview
In one paragraph

Review in Plant molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
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  8. A data-driven genome annotation approach for cassava.The Plant journal : for cell and molecular biology · 2024
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  9. Review
  10. Article
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  13. Review
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  17. Large structural variations in the haplotype-resolved African cassava genome.The Plant journal : for cell and molecular biology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Jessica B LyonsDepartment of Molecular & Cell Biology, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-3886-2146
Jessen V BredesonDepartment of Molecular & Cell Biology, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0001-5489-8512
Ben N MansfeldDonald Danforth Plant Science Center (DDPSC), St. Louis, MO, 63132, USA.ORCID http://orcid.org/0000-0001-6118-6409
Guillaume Jean BauchetBoyce Thompson Institute, Ithaca, NY, 14853, USA.ORCID http://orcid.org/0000-0003-3311-7726
Jeffrey BerryDonald Danforth Plant Science Center (DDPSC), St. Louis, MO, 63132, USA.ORCID http://orcid.org/0000-0002-8064-9787
Adam BoyherDonald Danforth Plant Science Center (DDPSC), St. Louis, MO, 63132, USA.
Lukas A MuellerBoyce Thompson Institute, Ithaca, NY, 14853, USA.ORCID http://orcid.org/0000-0001-8640-1750
Daniel S RokhsarDepartment of Molecular & Cell Biology, University of California, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-8704-2224
Rebecca S BartDonald Danforth Plant Science Center (DDPSC), St. Louis, MO, 63132, USA. rbart@danforthcenter.org.ORCID http://orcid.org/0000-0003-1378-3481

Funding

Bill and Melinda Gates Foundation OPP1194889Bill and Melinda Gates Foundation OPPGD1493
6 · The paper itself

Abstract

key messageWe demystify recent advances in genome assemblies for the heterozygous staple crop cassava (Manihot esculenta), and highlight key cassava genomic resources. Cassava, Manihot esculenta Crantz, is a crop of societal and agricultural importance in tropical regions around the world. Genomics provides a platform for accelerated improvement of cassava's nutritional and agronomic traits, as well as for illuminating aspects of cassava's history including its path towards domestication. The highly heterozygous nature of the cassava genome is widely recognized. However, the full extent and context of this heterozygosity has been difficult to reveal because of technological limitations within genome sequencing. Only recently, with several new long-read sequencing technologies coming online, has the genomics community been able to tackle some similarly difficult genomes. In light of these recent advances, we provide this review to document the current status of the cassava genome and genomic resources and provide a perspective on what to look forward to in the coming years.

Indexed as

ManihotChromosome MappingDomesticationGenomicsCassavaCrop improvementGenomicsHeterozygous genomesPhased genomes

Identifiers

PMID33604743
PMCPMC9162999

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.