Evidence map›Paper›PMID 33603257›Full record

ArticleNuclear instruments & methods in physics research. Section B, Beam interactions with materials and atoms2021

Synchrotron Radiation as a Tool for Macromolecular X-Ray Crystallography: a XXI Century Perspective.

Marek Grabowski, David R Cooper, Dariusz Brzezinski, Joanna M Macnar, Ivan G Shabalin, Marcin Cymborowski, Zbyszek Otwinowski, Wladek Minor

Abstract read
In one paragraph

Article in Nuclear instruments & methods in physics research. Section B, Beam interactions with materials and atoms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Other Techniques.Advances in biochemical engineering/biotechnology · 2026
    Review
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  6. Review
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  12. Optimal structure determination from sub-optimal diffraction data.Protein science : a publication of the Protein Society · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marek GrabowskiDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA22903, USA.
David R CooperDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA22903, USA.
Dariusz BrzezinskiDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA22903, USA.
Joanna M MacnarCollege of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw, Warsaw, Poland.
Ivan G ShabalinDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA22903, USA.
Marcin CymborowskiDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA22903, USA.
Zbyszek OtwinowskiDepartment of Biophysics, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Wladek MinorDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA22903, USA.

Funding

Reproducible, Unbiased Ligand Identification Assisted by Artificial Intelligence and Development of Ligand Reference LibrariesR01GM132595 · NIGMS · UNIVERSITY OF VIRGINIA · PI MINOR, WLADEK · 2019 to 2022
$2.3M
X-ray data analysis in the presence of structural variability - Administrative SupplementR01GM117080 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MINOR, WLADEK, OTWINOWSKI, ZBYSZEK · 2015 to 2018
$1.4M
Accurate measurements of phasing signal to determine macromolecular structuresR01GM118619 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI OTWINOWSKI, ZBYSZEK · 2017 to 2020
$1.3M
NIAID NIH HHS HHSN272201200026CNIAID NIH HHS HHSN272201700060CNIGMS NIH HHS R01 GM117080NIGMS NIH HHS R01 GM118619NIGMS NIH HHS R01 GM132595
6 · The paper itself

Abstract

Intense X-rays available at powerful synchrotron beamlines provide macromolecular crystallographers with an incomparable tool for investigating biological phenomena on an atomic scale. The resulting insights into the mechanism's underlying biological processes have played an essential role and shaped biomedical sciences during the last 30 years, considered the "golden age" of structural biology. In this review, we analyze selected aspects of the impact of synchrotron radiation on structural biology. Synchrotron beamlines have been used to determine over 70% of all macromolecular structures deposited into the Protein Data Bank (PDB). These structures were deposited by over 13,000 different research groups. Interestingly, despite the impressive advances in synchrotron technologies, the median resolution of macromolecular structures determined using synchrotrons has remained constant throughout the last 30 years, at about 2 Å. Similarly, the median times from the data collection to the deposition and release have not changed significantly. We describe challenges to reproducibility related to recording all relevant data and metadata during the synchrotron experiments, including diffraction images. Finally, we discuss some of the recent opinions suggesting a diminishing importance of X-ray crystallography due to impressive advances in Cryo-EM and theoretical modeling. We believe that synchrotrons of the future will increasingly evolve towards a life science center model, where X-ray crystallography, Cryo-EM, and other experimental and computational resources and knowledge are encompassed within a versatile research facility. The recent response of crystallographers to the COVID-19 pandemic suggests that X-ray crystallography conducted at synchrotron beamlines will continue to play an essential role in structural biology and drug discovery for years to come.

Identifiers

PMID33603257
PMCPMC7886262

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.