Evidence map›Paper›PMID 33602825›Full record

ArticleScience (New York, N.Y.)2021

Clinically relevant mutations in core metabolic genes confer antibiotic resistance.

Allison J Lopatkin, Sarah C Bening, Abigail L Manson, Jonathan M Stokes, Michael A Kohanski, Ahmed H Badran, Ashlee M Earl, Nicole J Cheney, Jason H Yang, James J Collins

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 195 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
195citing papers in PubMed, 1 pooled it
44.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

195 citing papers in PubMed, 1 synthesis or guideline pooled it, 341 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. eLife · 2026
    Article
  11. Article
  12. Article
  13. Metabolism-Based Biomarkers for Rapid Phenotypic Antibiotic Susceptibility Testing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  14. Article
  15. Article
  16. Linkage of nucleotide and functional diversity varies across gut bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  17. Article
  18. Article
  19. Review
  20. Metabolic perturbation reduces antibiotic tolerance inMicrobiology (Reading, England) · 2026
    Article

135 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Allison J LopatkinInstitute for Medical Engineering and Science and Department of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.ORCID https://orcid.org/0000-0003-0018-9205
Sarah C BeningInstitute for Medical Engineering and Science and Department of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.ORCID https://orcid.org/0000-0001-7449-3184
Abigail L MansonInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID https://orcid.org/0000-0002-3800-0714
Jonathan M StokesInstitute for Medical Engineering and Science and Department of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.
Michael A KohanskiDepartment of Otorhinolaryngology-Head and Neck Surgery, Division of Rhinology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID https://orcid.org/0000-0001-8399-364X
Ahmed H BadranInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID https://orcid.org/0000-0002-8105-1883
Ashlee M EarlInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID https://orcid.org/0000-0001-7857-9145
Nicole J CheneyRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, USA.ORCID https://orcid.org/0000-0003-3937-8310
Jason H YangRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, USA.ORCID https://orcid.org/0000-0003-0921-4657
James J CollinsInstitute for Medical Engineering and Science and Department of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA. jimjc@mit.edu.ORCID https://orcid.org/0000-0002-5560-8246
Broad Institute · USRutgers, The State University of New Jersey · USUniversity of Pennsylvania · US

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI CUOMO, CHRISTINA A · 2014 to 2024
$66.5M
Systems Biology CoreU19AI162598 · NIAID · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI RUSSELL, DAVID G · 2021 to 2025
$13.9M
Genetic, Metabolic and Regulatory Control of MIC and Relapse in M. tuberculosisR01AI146194 · NIAID · UNIVERSITY OF WASHINGTON · PI ALLAND, DAVID, SHERMAN, DAVID R · 2020 to 2024
$4.1M
Functional Interrogation Of Ribosomal Biology Using Continuous EvolutionDP5OD024590 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI BADRAN, AHMED HUSSEIN · 2017 to 2021
$2.2M
Effects of Host Metabolic Variation on Antibiotic SusceptibilityR00GM118907 · NIGMS · RBHS-NEW JERSEY MEDICAL SCHOOL · PI YANG, JASON HUNG-YING · 2020 to 2022
$747k
NIAID NIH HHS R01 AI146194NIAID NIH HHS U19 AI110818NIAID NIH HHS U19 AI162598NIGMS NIH HHS R00 GM118907NIH HHS DP5 OD024590
6 · The paper itself

Abstract

Although metabolism plays an active role in antibiotic lethality, antibiotic resistance is generally associated with drug target modification, enzymatic inactivation, and/or transport rather than metabolic processes. Evolution experiments of

Indexed as

Genes, BacterialMutationAdaptation, PhysiologicalAnti-Bacterial AgentsCarbenicillinCiprofloxacinCitric Acid CycleDirected Molecular EvolutionDrug Resistance, BacterialEnergy MetabolismEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsGene Knockdown TechniquesGenome, BacterialKetoglutarate Dehydrogenase ComplexAnti-Bacterial AgentsCarbenicillinCiprofloxacinEscherichia coli ProteinsKetoglutarate Dehydrogenase ComplexStreptomycin

Identifiers

PMID33602825
PMCPMC8285040
OpenAlexW3129242605

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.