Evidence map›Paper›PMID 33602682›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2021

Spatial Analysis and Clinical Significance of HLA Class-I and Class-II Subunit Expression in Non-Small Cell Lung Cancer.

Ila J Datar, Sacha C Hauc, Shruti Desai, Nicole Gianino, Brian Henick, Yuting Liu, Kostas Syrigos, David L Rimm, Paula Kavathas, Soldano Ferrone and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. TNF-⍺-mediated myeloid-instructed CD14Cell reports. Medicine · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Ila J Datar *Department of Pathology, Yale University School of Medicine, New Haven, Connecticut.
Sacha C Hauc *Department of Pathology, Yale University School of Medicine, New Haven, Connecticut.
Shruti DesaiDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut.ORCID 0000-0002-5234-5890
Nicole GianinoDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut.ORCID 0000-0003-1919-5920
Brian HenickDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut.
Yuting LiuDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut.
Kostas SyrigosOncology Unit, Department of Medicine, Athens University, Athens, Greece.
David L RimmDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut.ORCID 0000-0001-5820-4397
Paula KavathasLaboratory Medicine and Immunobiology, Yale School of Medicine, New Haven, Connecticut.
Soldano FerroneMassachusetts General Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-2900-8834
Kurt A SchalperDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut. kurt.schalper@yale.edu.
Yale University · USAthens State University · USColumbia University Irving Medical Center · USMassachusetts General Hospital · US

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI MEGAN C KING · 1985 to 2026
$85.0M
Yale SPORE in Lung Cancer (YSILC): The Biology and Personalized Treatment of Lung CancerP50CA196530 · NCI · YALE UNIVERSITY · PI Kurt A Schalper · 2015 to 2026
$31.1M
Quantitative and Spatially-Resolved Analysis of the Tumor Immune Contexture for Optimal Diagnosis and Treatment of Lung CancerR37CA245154 · NCI · YALE UNIVERSITY · PI SCHALPER, KURT A · 2020 to 2025
$2.6M
T cell plasticity, fusion proteins and CAR T cell-based immunotherapy of head and neck cancerR01DE028172 · NIDCR · MASSACHUSETTS GENERAL HOSPITAL · PI WANG, XINHUI · 2018 to 2022
$1.9M
ROLE OF THE HLA ANTIGEN PRESENTING MACHINERY (APM) IN RESISTANCE TO PD-1 AXIS BLOCKADE IN NON-SMALL CELL LUNG CANCERR03CA219603 · NCI · YALE UNIVERSITY · PI FERRONE, SOLDANO, SCHALPER, KURT A · 2019 to 2020
$184k
Potential role of brachyury in HLA class I antigen processing machinery component downregulation in chordoma cellsR03CA253319 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI FERRONE, SOLDANO, SCHWAB, JOSEPH HASBROUCK · 2020 to 2020
$167k
NCI NIH HHS P30 CA016359NCI NIH HHS P50 CA196530NCI NIH HHS R03 CA219603NCI NIH HHS R03 CA253319NCI NIH HHS R37 CA245154NIDCR NIH HHS R01 DE028172
6 · The paper itself

Abstract

purposeTo analyze the distribution, associated immune contexture, and clinical significance of human leukocyte antigen (HLA) class-I and HLA class-II subunits in non-small cell lung cancer (NSCLC). EXPERIMENTAL

designUsing spatially resolved and quantitative multiplexed immunofluorescence we studied the tumor/stromal tissue distribution, cancer cell-specific defects, and clinicopathologic/survival associations of β2 microglobulin (β2M), HLA-A, and HLA-B,-C heavy chains, as well as HLA class-II β chain in >700 immunotherapy-naïve NSCLCs from four independent cohorts. Genomic analysis of HLA genes in NSCLC was performed using two publicly available cohorts.

resultsCancer cell-specific downregulation of HLA markers was identified in 30.4% of cases. β2M was downregulated in 9.8% (70/714), HLA-A in 9% (65/722), HLA-B,-C in 12.1% (87/719), and HLA class-II in 17.7% (127/717) of evaluable samples. Concurrent downregulation of β2M, HLA-B,-C, and HLA class-II was commonly identified. Deleterious mutations in HLA genes were detected in <5% of lung malignancies. Tumors with cancer cell-specific β2M downregulation displayed reduced T cells and increased natural killer (NK)-cell infiltration. Samples with cancer cell HLA-A downregulation displayed modest increase in CD8

conclusionsOur results reveal frequent and differential defects in HLA class-I and HLA class-II protein subunit expression in immunotherapy-naïve NSCLCs associated with distinct tumor microenvironment composition and patient survival.

Indexed as

AllelesGene Expression Regulation, NeoplasticCarcinoma, Non-Small-Cell LungComputational BiologyDNA Mutational AnalysisFluorescent Antibody TechniqueHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHumansLung NeoplasmsMutationPrognosisHistocompatibility Antigens Class IHistocompatibility Antigens Class II

Identifiers

PMID33602682
PMCPMC8734284
OpenAlexW3129983476

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.