Evidence map›Paper›PMID 33601596›Full record

ArticlePhysical review. E2021

Evaluating diffusion resistance of a constriction in a membrane channel by the method of boundary homogenization.

Alexei T Skvortsov, Leonardo Dagdug, Alexander M Berezhkovskii, Ian R MacGillivray, Sergey M Bezrukov

Abstract read
In one paragraph

Article in Physical review. E, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Diffusion Resistance of Segmented Channels.The journal of physical chemistry. B · 2023
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexei T SkvortsovMaritime Division, Defence Science and Technology, Fishermans Bend, VIC 3207, Australia.
Leonardo DagdugPhysics Department, Universidad Autonoma Metropolitana-Iztapalapa, 09340 Mexico City, Mexico.
Alexander M BerezhkovskiiMathematical and Statistical Computing Laboratory, Office of Intramural Research, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892, USA.
Ian R MacGillivrayMaritime Division, Defence Science and Technology, Fishermans Bend, VIC 3207, Australia.
Sergey M BezrukovSection on Molecular Transport, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.

Funding

Biophysics of Large Membrane ChannelsZIAHD000072 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI BEZRUKOV, SERGEY M · 2009 to 2025
$22.8M
Modeling of kinetic processes in biological systemsZIACT000273 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI BEREZHKOVSKII, ALEXANDER · 2009 to 2021
$2.1M
Intramural NIH HHS ZIA HD000072
6 · The paper itself

Abstract

In this paper we analyze diffusive transport of noninteracting electrically uncharged solute molecules through a cylindrical membrane channel with a constriction located in the middle of the channel. The constriction is modeled by an infinitely thin partition with a circular hole in its center. The focus is on how the presence of the partition slows down the transport governed by the difference in the solute concentrations in the two reservoirs separated by the membrane. It is assumed that the solutions in both reservoirs are well stirred. To quantify the effect of the constriction we use the notion of diffusion resistance defined as the ratio of the concentration difference to the steady-state flux. We show that when the channel length exceeds its radius, the diffusion resistance is the sum of the diffusion resistance of the cylindrical channel without a partition and an additional diffusion resistance due to the presence of the partition. We derive an expression for the additional diffusion resistance as a function of the tube radius and that of the hole in the partition. The derivation involves the replacement of the nonpermeable partition with the hole by an effective uniform semipermeable partition with a properly chosen permeability. Such a replacement makes it possible to reduce the initial three-dimensional diffusion problem to a one-dimensional one that can be easily solved. To determine the permeability of the effective partition, we take advantage of the results found earlier for trapping of diffusing particles by inhomogeneous surfaces, which were obtained with the method of boundary homogenization. Brownian dynamics simulations are used to corroborate our approximate analytical results and to establish the range of their applicability.

Identifiers

PMID33601596
PMCPMC9004261

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.