Evidence map›Paper›PMID 33600077›Full record

ArticlePlant biotechnology journal2021

Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study.

Aijun Wang, Xinyue Shu, Xin Jing, Chengzhi Jiao, Lei Chen, Jinfeng Zhang, Li Ma, Yuqi Jiang, Naoki Yamamoto, Shuangcheng Li and 10 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed, 1 pooled it
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 1 synthesis or guideline pooled it, 101 citations in OpenAlex.

  1. Frontiers in plant science · 2022
    Pooled it
  2. Review
  3. Article
  4. Article
  5. Quantitative resistance toFrontiers in plant science · 2026
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 1 country.

Aijun WangState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.ORCID 0000-0002-2985-5796
Xinyue ShuState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.
Xin JingNovogene Bioinformatics Institute, Beijing, China.
Chengzhi JiaoNovogene Bioinformatics Institute, Beijing, China.
Lei ChenRice Research Institute of Sichuan Agricultural University, Chengdu, China.
Jinfeng ZhangRice Research Institute of Sichuan Agricultural University, Chengdu, China.
Li MaState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.
Yuqi JiangState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.
Naoki YamamotoState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.
Shuangcheng LiState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.ORCID 0000-0001-5684-0533
Qiming DengRice Research Institute of Sichuan Agricultural University, Chengdu, China.
Shiquan WangRice Research Institute of Sichuan Agricultural University, Chengdu, China.
Jun ZhuRice Research Institute of Sichuan Agricultural University, Chengdu, China.
Yueyang LiangRice Research Institute of Sichuan Agricultural University, Chengdu, China.
Ting ZouState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.ORCID 0000-0002-6442-4895
Huainian LiuRice Research Institute of Sichuan Agricultural University, Chengdu, China.
Lingxia WangRice Research Institute of Sichuan Agricultural University, Chengdu, China.
Yubi HuangState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.
Ping LiState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.
Aiping ZhengState Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, China.
Southwestern University of Finance and Economics · CNSichuan Agricultural University · CNNovogene Bioinformatics Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice sheath blight (RSB) is an economically significant disease affecting rice yield worldwide. Genetic resistance to RSB is associated with multiple minor genes, with each providing a minor phenotypic effect, but the underlying dominant resistance genes remain unknown. A genome-wide association study (GWAS) of 259 diverse rice varieties, with genotypes based on a single nucleotide polymorphism (SNP) and haplotype, was conducted to assess their sheath blight reactions at three developmental stages (seedlings, tillering and booting). A total of 653 genes were correlated with sheath blight resistance, of which the disease resistance protein RPM1 (OsRSR1) and protein kinase domain-containing protein (OsRLCK5) were validated by overexpression and knockdown assays. We further found that the coiled-coil (CC) domain of OsRSR1 (OsRSR1-CC) and full-length OsRLCK5 interacted with serine hydroxymethyltransferase 1 (OsSHM1) and glutaredoxin (OsGRX20), respectively. It was found that OsSHM1, which has a role in the reactive oxygen species (ROS) burst, and OsGRX20 enhanced the antioxidation ability of plants. A regulation model of the new RSB resistance though the glutathione (GSH)-ascorbic acid (AsA) antioxidant system was therefore revealed. These results enhance our understanding of RSB resistance mechanisms and provide better gene resources for the breeding of disease resistance in rice.

Indexed as

OryzaDisease ResistanceGenetic Association StudiesPlant BreedingPlant DiseasesPlant ProteinsRhizoctoniaPlant Proteinsgenome-wide association studyglutathione-ascorbic acid antioxidant systemresistance genesRhizoctonia solani AG1-IArice sheath blight

Identifiers

PMID33600077
PMCPMC8384605
OpenAlexW3130501971

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.