Evidence map›Paper›PMID 33597729›Full record

ArticleLeukemia2021

Characterization of complete lncRNAs transcriptome reveals the functional and clinical impact of lncRNAs in multiple myeloma.

Arantxa Carrasco-Leon, Teresa Ezponda, Cem Meydan, Luis V Valcárcel, Raquel Ordoñez, Marta Kulis, Leire Garate, Estíbaliz Miranda, Victor Segura, Elisabeth Guruceaga and 17 more

Open access · hybridAbstract read
In one paragraph

Article in Leukemia, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
5.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. bioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 8 institutions in 3 countries.

Arantxa Carrasco-Leon *Área de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.ORCID http://orcid.org/0000-0002-4584-443X
Teresa Ezponda *Área de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.ORCID http://orcid.org/0000-0003-3682-7125
Cem MeydanDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.ORCID http://orcid.org/0000-0002-0663-6216
Luis V ValcárcelÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.ORCID http://orcid.org/0000-0003-3769-5419
Raquel OrdoñezÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.
Marta KulisFundació Clínic per la Recerca Biomèdica, Barcelona, Spain.
Leire GarateÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.
Estíbaliz MirandaÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.
Victor SeguraDepartment of Bioinformatics, CIMA/UNAV/IDISNA, Pamplona, Spain.
Elisabeth GuruceagaDepartment of Bioinformatics, CIMA/UNAV/IDISNA, Pamplona, Spain.
Amaia Vilas-ZornozaÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.
Diego AlignaniCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, Pamplona, Spain.
Marién PascualÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.
Ane AmundarainÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.ORCID http://orcid.org/0000-0002-2325-5570
Laura Castro-LabradorÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.ORCID http://orcid.org/0000-0003-4733-5468
Patxi San Martín-UrizÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.
Halima El-OmriDepartment of Hematology & BMT, Hamad Medical Corporation, NCCCR, Doha, Qatar.
Ruba Y TahaDepartment of Hematology & BMT, Hamad Medical Corporation, NCCCR, Doha, Qatar.
Maria J CalasanzCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, Pamplona, Spain.ORCID http://orcid.org/0000-0002-0374-3008
Francisco J PlanesUniversity of Navarra, Tecnun School of Engineering, San Sebastián, Spain.
Bruno PaivaCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, Pamplona, Spain.ORCID http://orcid.org/0000-0003-1977-3815
Christopher E MasonDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.ORCID http://orcid.org/0000-0002-1850-1642
Jesús F San MiguelCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, Pamplona, Spain.ORCID http://orcid.org/0000-0002-9183-4857
José I Martin-SuberoCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, Pamplona, Spain.ORCID http://orcid.org/0000-0001-8809-5195
Ari MelnickDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.ORCID http://orcid.org/0000-0002-8074-2287
Felipe ProsperÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain.ORCID http://orcid.org/0000-0001-6115-8790
Xabier AgirreÁrea de Oncología, Centro de Investigación Médica Aplicada (CIMA), Universidad de Navarra, IDISNA, Pamplona, Spain. xaguirre@unav.es.ORCID http://orcid.org/0000-0002-6558-9560
Centro de Investigación Biomédica en Red de Cáncer · ESUniversidad de Navarra · ESCornell University · USClinica Universidad de Navarra · ESNational Center for Cancer Care and Research · QAFundació Clínic per a la Recerca Biomèdica · ESInstitució Catalana de Recerca i Estudis Avançats · ESNavarre Institute of Health Research · ES

Funding

Targeting EZH2 in Germinal Center Derived B-Cell LymphomaR01CA187109 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MELNICK, ARI M. · 2014 to 2017
$1.8M
NCI NIH HHS R01 CA187109
6 · The paper itself

Abstract

Multiple myeloma (MM) is an incurable disease, whose clinical heterogeneity makes its management challenging, highlighting the need for biological features to guide improved therapies. Deregulation of specific long non-coding RNAs (lncRNAs) has been shown in MM, nevertheless, the complete lncRNA transcriptome has not yet been elucidated. In this work, we identified 40,511 novel lncRNAs in MM samples. lncRNAs accounted for 82% of the MM transcriptome and were more heterogeneously expressed than coding genes. A total of 10,351 overexpressed and 9,535 downregulated lncRNAs were identified in MM patients when compared with normal bone-marrow plasma cells. Transcriptional dynamics study of lncRNAs in the context of normal B-cell maturation revealed 989 lncRNAs with exclusive expression in MM, among which 89 showed de novo epigenomic activation. Knockdown studies on one of these lncRNAs, SMILO (specific myeloma intergenic long non-coding RNA), resulted in reduced proliferation and induction of apoptosis of MM cells, and activation of the interferon pathway. We also showed that the expression of lncRNAs, together with clinical and genetic risk alterations, stratified MM patients into several progression-free survival and overall survival groups. In summary, our global analysis of the lncRNAs transcriptome reveals the presence of specific lncRNAs associated with the biological and clinical behavior of the disease.

Indexed as

ApoptosisCell ProliferationGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMultiple MyelomaProgression-Free SurvivalRNA, Long NoncodingTranscriptomeRNA, Long Noncoding

Identifiers

PMID33597729
PMCPMC8102198
OpenAlexW3131811919

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.