Evidence map›Paper›PMID 33595639›Full record

ArticleGenome biology and evolution2021

Transposable Element Mobilization in Interspecific Yeast Hybrids.

Caiti Smukowski Heil, Kira Patterson, Angela Shang-Mei Hickey, Erica Alcantara, Maitreya J Dunham

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Loss of Heterozygosity and Its Importance in Evolution.Journal of molecular evolution · 2023
    Review
  7. Recent insights into the evolution of mutation rates in yeast.Current opinion in genetics & development · 2022
    Review
  8. Article
  9. Article
  10. Article
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Caiti Smukowski HeilDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Kira PattersonDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Angela Shang-Mei HickeyDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Erica AlcantaraDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Maitreya J DunhamDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
University of Washington · US

Funding

INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
Howard Hughes Medical InstituteNHGRI NIH HHS T32 HG000035
6 · The paper itself

Abstract

Barbara McClintock first hypothesized that interspecific hybridization could provide a "genomic shock" that leads to the mobilization of transposable elements (TEs). This hypothesis is based on the idea that regulation of TE movement is potentially disrupted in hybrids. However, the handful of studies testing this hypothesis have yielded mixed results. Here, we set out to identify if hybridization can increase transposition rate and facilitate colonization of TEs in Saccharomyces cerevisiae × Saccharomyces uvarum interspecific yeast hybrids. Saccharomyces cerevisiae have a small number of active long terminal repeat retrotransposons (Ty elements), whereas their distant relative S. uvarum have lost the Ty elements active in S. cerevisiae. Although the regulation system of Ty elements is known in S. cerevisiae, it is unclear how Ty elements are regulated in other Saccharomyces species, and what mechanisms contributed to the loss of most classes of Ty elements in S. uvarum. Therefore, we first assessed whether TEs could insert in the S. uvarum sub-genome of a S. cerevisiae × S. uvarum hybrid. We induced transposition to occur in these hybrids and developed a sequencing technique to show that Ty elements insert readily and nonrandomly in the S. uvarum genome. We then used an in vivo reporter construct to directly measure transposition rate in hybrids, demonstrating that hybridization itself does not alter rate of mobilization. However, we surprisingly show that species-specific mitochondrial inheritance can change transposition rate by an order of magnitude. Overall, our results provide evidence that hybridization can potentially facilitate the introduction of TEs across species boundaries and alter transposition via mitochondrial transmission, but that this does not lead to unrestrained proliferation of TEs suggested by the genomic shock theory.

Indexed as

DNA Transposable ElementsHybridization, GeneticGenomicsRetroelementsSaccharomycesSaccharomyces cerevisiaeSequence AnalysisSpecies SpecificityTerminal Repeat SequencesWhole Genome SequencingDNA Transposable ElementsRetroelementshybridizationSaccharomycestransposable elementstransposition rateTy element

Identifiers

PMID33595639
PMCPMC7952228
OpenAlexW3131042276

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.