Evidence map›Paper›PMID 33594412›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2021

A high-throughput phenotyping algorithm is portable from adult to pediatric populations.

Alon Geva, Molei Liu, Vidul A Panickan, Paul Avillach, Tianxi Cai, Kenneth D Mandl

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Machine learning approaches for electronic health records phenotyping: a methodical review.Journal of the American Medical Informatics Association : JAMIA · 2023
    Article
  5. Progress toward a science of learning systems for healthcare.Journal of the American Medical Informatics Association : JAMIA · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alon GevaComputational Health Informatics Program, Boston Children's Hospital, Boston, Massachusetts, USA.ORCID 0000-0002-8574-0133
Molei LiuDepartment of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts, USA.
Vidul A PanickanDepartment of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, USA.
Paul AvillachComputational Health Informatics Program, Boston Children's Hospital, Boston, Massachusetts, USA.ORCID 0000-0002-0235-7543
Tianxi CaiDepartment of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts, USA.
Kenneth D MandlComputational Health Informatics Program, Boston Children's Hospital, Boston, Massachusetts, USA.

Funding

Pediatric Critical Care Scientist Development ProgramK12HD047349 · NICHD · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI HEATHER T. KEENAN, Kevin M Watt · 2004 to 2026
$17.0M
VERITY: Value and Evidence in Rheumatology using bioInformaTics, and advanced analYticsP30AR072577 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Daniel Hal Solomon · 2017 to 2026
$9.8M
Instrumenting the Delivery System for a Genomics Research Information CommonsU01TR002623 · NCATS · BOSTON CHILDREN'S HOSPITAL · PI MANDL, KENNETH D. · 2019 to 2024
$8.6M
NCATS NIH HHS U01 TR002623NHLBI NIH HHS L40 HL133929NIAMS NIH HHS P30 AR072577NICHD NIH HHS K12 HD047349
6 · The paper itself

Abstract

objectiveMultimodal automated phenotyping (MAP) is a scalable, high-throughput phenotyping method, developed using electronic health record (EHR) data from an adult population. We tested transportability of MAP to a pediatric population. MATERIALS AND

methodsWithout additional feature engineering or supervised training, we applied MAP to a pediatric population enrolled in a biobank and evaluated performance against physician-reviewed medical records. We also compared performance of MAP at the pediatric institution and the original adult institution where MAP was developed, including for 6 phenotypes validated at both institutions against physician-reviewed medical records.

resultsMAP performed equally well in the pediatric setting (average AUC 0.98) as it did at the general adult hospital system (average AUC 0.96). MAP's performance in the pediatric sample was similar across the 6 specific phenotypes also validated against gold-standard labels in the adult biobank.

conclusionsMAP is highly transportable across diverse populations and has potential for wide-scale use.

Indexed as

AlgorithmsElectronic Health RecordsHumansPhenotypebiobank, high-throughputdata miningelectronic health recordsphenotype

Identifiers

PMID33594412
PMCPMC8661408

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.