Evidence map›Paper›PMID 33594248›Full record

ArticleCommunications biology2021

Structure-function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis.

Hiroyuki Kajiura, Takuya Yoshizawa, Yuji Tokumoto, Nobuaki Suzuki, Shinya Takeno, Kanokwan Jumtee Takeno, Takuya Yamashita, Shun-Ichi Tanaka, Yoshinobu Kaneko, Kazuhito Fujiyama and 2 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Hiroyuki Kajiura *International Center for Biotechnology, Osaka University, 2-1 Yamada-oka, Suita, Osaka, 565-0871, Japan.ORCID 0000-0001-5811-1625
Takuya Yoshizawa *Department of Biotechnology, College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga, 525-8577, Japan.
Yuji TokumotoTechnical Research Institute, Hitachi Zosen Corporation, 2-2-11 Funamachi, Taisyo, Osaka, 551-0022, Japan.ORCID 0000-0001-5934-026X
Nobuaki SuzukiTechnical Research Institute, Hitachi Zosen Corporation, 2-2-11 Funamachi, Taisyo, Osaka, 551-0022, Japan.
Shinya TakenoTechnical Research Institute, Hitachi Zosen Corporation, 2-2-11 Funamachi, Taisyo, Osaka, 551-0022, Japan.
Kanokwan Jumtee TakenoTechnical Research Institute, Hitachi Zosen Corporation, 2-2-11 Funamachi, Taisyo, Osaka, 551-0022, Japan.
Takuya YamashitaDepartment of Biotechnology, College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga, 525-8577, Japan.
Shun-Ichi TanakaDepartment of Biotechnology, College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga, 525-8577, Japan.
Yoshinobu KanekoYeast Genetic Resources Lab, Graduate School of Engineering, Osaka University, 2-1 Yamada-oka, Suita, Osaka, 565-0871, Japan.
Kazuhito FujiyamaInternational Center for Biotechnology, Osaka University, 2-1 Yamada-oka, Suita, Osaka, 565-0871, Japan.
Hiroyoshi MatsumuraDepartment of Biotechnology, College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga, 525-8577, Japan. h-matsu@fc.ritsumei.ac.jp.ORCID 0000-0003-0361-3796
Yoshihisa NakazawaTechnical Research Institute, Hitachi Zosen Corporation, 2-2-11 Funamachi, Taisyo, Osaka, 551-0022, Japan. nakazawa@tokushima-u.ac.jp.
Ritsumeikan University · JPKanadevia (Japan) · JPOsaka International University · JPThe University of Osaka · JPUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some plant trans-1,4-prenyltransferases (TPTs) produce ultrahigh molecular weight trans-1,4-polyisoprene (TPI) with a molecular weight of over 1.0 million. Although plant-derived TPI has been utilized in various industries, its biosynthesis and physiological function(s) are unclear. Here, we identified three novel Eucommia ulmoides TPT isoforms-EuTPT1, 3, and 5, which synthesized TPI in vitro without other components. Crystal structure analysis of EuTPT3 revealed a dimeric architecture with a central hydrophobic tunnel. Mutation of Cys94 and Ala95 on the central hydrophobic tunnel no longer synthesizd TPI, indicating that Cys94 and Ala95 were essential for forming the dimeric architecture of ultralong-chain TPTs and TPI biosynthesis. A spatiotemporal analysis of the physiological function of TPI in E. ulmoides suggested that it is involved in seed development and maturation. Thus, our analysis provides functional and mechanistic insights into TPI biosynthesis and uncovers biological roles of TPI in plants.

Indexed as

DimethylallyltranstransferaseEucommiaceaeHemiterpenesLatexModels, MolecularMolecular WeightMutationPlant ProteinsPlants, Genetically ModifiedProtein ConformationStructure-Activity Relationship1,4-polyisopreneDimethylallyltranstransferaseHemiterpenesLatexPlant Proteins

Identifiers

PMID33594248
PMCPMC7887238
OpenAlexW3131027169

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.