Evidence map›Paper›PMID 33594065›Full record

ArticleNPJ genomic medicine2021

Whole exome sequencing uncovered highly penetrant recessive mutations for a spectrum of rare genetic pediatric diseases in Bangladesh.

Hosneara Akter, Mohammad Shahnoor Hossain, Nushrat Jahan Dity, Md Atikur Rahaman, K M Furkan Uddin, Nasna Nassir, Ghausia Begum, Reem Abdel Hameid, Muhammad Sougatul Islam, Tahrima Arman Tusty and 13 more

Open access · goldAbstract read
In one paragraph

Article in NPJ genomic medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 5 countries.

Hosneara Akter *Genetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Mohammad Shahnoor Hossain *Department of Genetic Engineering & Biotechnology, University of Dhaka, Dhaka, Bangladesh.
Nushrat Jahan DityGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Md Atikur RahamanGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
K M Furkan UddinGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Nasna NassirCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Science, Dubai, UAE.ORCID http://orcid.org/0000-0002-8883-9630
Ghausia BegumCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Science, Dubai, UAE.
Reem Abdel HameidCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Science, Dubai, UAE.
Muhammad Sougatul IslamBioTED, Dhaka, Bangladesh.ORCID http://orcid.org/0000-0001-5424-6194
Tahrima Arman TustyDepartment of Genetic Engineering & Biotechnology, University of Dhaka, Dhaka, Bangladesh.
Mohammad BasiruzzamanGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Shaoli SarkarGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Mazharul IslamGenetics and Genomic Medicine Centre, NeuroGen Children's Healthcare, Dhaka, Bangladesh.
Sharmin JahanDepartment of Endocrinology & Metabolism, Bangabandhu Sheikh Mujib Medical University, Dhaka, Bangladesh.
Elaine T LimDepartment of Genetics, Harvard Medical School, Boston, USA.ORCID http://orcid.org/0000-0003-3651-0654
Marc Woodbury-SmithThe Centre for Applied Genomics, The Hospital for Sick Children, Toronto, Canada.
Dimitri James StavropoulosGenome Diagnostics, Department of Pediatric Laboratory Medicine, The Hospital for Sick Children, Toronto, Canada.
Darren D O'RiellyFaculty of Medicine, Memorial University, St. John's, NL, Canada.
Bakhrom K BerdeivCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Science, Dubai, UAE.
A H M Nurun NabiDepartment of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, Bangladesh.
Mohammed Nazmul AhsanDepartment of Genetic Engineering & Biotechnology, University of Dhaka, Dhaka, Bangladesh.
Stephen W SchererThe Centre for Applied Genomics, The Hospital for Sick Children, Toronto, Canada.ORCID http://orcid.org/0000-0002-8326-1999
Mohammed UddinCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Science, Dubai, UAE. mohammed.uddin@mbru.ac.ae.
Mohammed Bin Rashid University of Medicine and Health Sciences · AEUniversity of Dhaka · BDHospital for Sick Children · CABangladesh Medical University · BDHarvard University · USMemorial University of Newfoundland · CAUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Collectively, rare genetic diseases affect a significant number of individuals worldwide. In this study, we have conducted whole-exome sequencing (WES) and identified underlying pathogenic or likely pathogenic variants in five children with rare genetic diseases. We present evidence for disease-causing autosomal recessive variants in a range of disease-associated genes such as DHH-associated 46,XY gonadal dysgenesis (GD) or 46,XY sex reversal 7, GNPTAB-associated mucolipidosis II alpha/beta (ML II), BBS1-associated Bardet-Biedl Syndrome (BBS), SURF1-associated Leigh Syndrome (LS) and AP4B1-associated spastic paraplegia-47 (SPG47) in unrelated affected members from Bangladesh. Our analysis pipeline detected three homozygous mutations, including a novel c. 863 G > C (p.Pro288Arg) variant in DHH, and two compound heterozygous variants, including two novel variants: c.2972dupT (p.Met991Ilefs*) in GNPTAB and c.229 G > C (p.Gly77Arg) in SURF1. All mutations were validated by Sanger sequencing. Collectively, this study adds to the genetic heterogeneity of rare genetic diseases and is the first report elucidating the genetic profile of (consanguineous and nonconsanguineous) rare genetic diseases in the Bangladesh population.

Identifiers

PMID33594065
PMCPMC7887195
OpenAlexW3130785851

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.