Evidence map›Paper›PMID 33593998›Full record

ArticleScience signaling2021

A predictive model of gene expression reveals the role of network motifs in the mating response of yeast.

Amy E Pomeroy, Matthew I Peña, John R Houser, Gauri Dixit, Henrik G Dohlman, Timothy C Elston, Beverly Errede

Abstract read
In one paragraph

Article in Science signaling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. TheIMA fungus · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Molecular switch architecture determines response properties of signaling pathways.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Amy E PomeroyCurriculum in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. errede@email.unc.edu telston@med.unc.edu.ORCID 0000-0001-9217-3539
Matthew I PeñaDepartment of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. errede@email.unc.edu telston@med.unc.edu.ORCID 0000-0002-4322-7462
John R HouserDepartment of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Gauri DixitDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Henrik G DohlmanDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.ORCID 0000-0003-2443-0729
Timothy C ElstonDepartment of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. errede@email.unc.edu telston@med.unc.edu.ORCID 0000-0002-4601-2117
Beverly ErredeDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. errede@email.unc.edu telston@med.unc.edu.ORCID 0000-0002-1557-4440

Funding

Negative and positive feedback in cell signalingR35GM118105 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Henrik G. Dohlman · 2016 to 2026
$6.6M
Mathematical modeling of cellular signaling systemsR35GM127145 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Timothy C Elston · 2018 to 2026
$3.9M
UNC Predoc Training Progr in Bioinformatics/Comp BiologyT32GM067553 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C · 2005 to 2019
$2.5M
Mechanisms of noise regulation in cell fate transitionsR01GM114136 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOHLMAN, HENRIK G., ELSTON, TIMOTHY C · 2015 to 2018
$2.1M
NIGMS NIH HHS R01 GM114136NIGMS NIH HHS R35 GM118105NIGMS NIH HHS R35 GM127145NIGMS NIH HHS T32 GM067553
6 · The paper itself

Abstract

Cells use signaling pathways to receive and process information about their environment. These nonlinear systems rely on feedback and feedforward regulation to respond appropriately to changing environmental conditions. Mathematical models describing signaling pathways often lack predictive power because they are not trained on data that encompass the diverse time scales on which these regulatory mechanisms operate. We addressed this limitation by measuring transcriptional changes induced by the mating response in

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGene ExpressionGene Expression Regulation, FungalPheromonesPheromonesSaccharomyces cerevisiae Proteins

Identifiers

PMID33593998
PMCPMC8193838

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.