Evidence map›Paper›PMID 33593838›Full record

ArticleAntimicrobial agents and chemotherapy2023

Nybomycin inhibits both types of

Dmitrii I Shiriaev, Alina A Sofronova, Ekaterina A Berdnikovich, Dmitrii A Lukianov, Ekaterina S Komarova, Valeria I Marina, Yuliya V Zakalyukina, Mikhail V Biryukov, Tinashe P Maviza, Yan A Ivanenkov and 3 more

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. The Spermidine Synthase Gene as a Reporter of Transcription Inhibition inInternational journal of molecular sciences · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Strategic re-engineering of antibiotics.Nature reviews bioengineering · 2025
    Article
  6. Article
  7. The fitness connection of antibiotic resistance.Frontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Dmitrii I ShiriaevDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia dmitrii.shiriaev@outlook.com i.osterman@skoltech.ru.ORCID https://orcid.org/0000-0002-9779-1501
Alina A SofronovaDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia dmitrii.shiriaev@outlook.com i.osterman@skoltech.ru.
Ekaterina A BerdnikovichDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia.
Dmitrii A LukianovCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, 143028 Russia.
Ekaterina S KomarovaDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia.
Valeria I MarinaDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia.
Yuliya V ZakalyukinaDepartment of Biology and Department of Soil Science, Lomonosov Moscow State University, Moscow, 119234 Russia.
Mikhail V BiryukovDepartment of Biology and Department of Soil Science, Lomonosov Moscow State University, Moscow, 119234 Russia.ORCID https://orcid.org/0000-0002-5765-1221
Tinashe P MavizaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, 143028 Russia.
Yan A IvanenkovInstitute of Biochemistry and Genetics Russian Academy of Science (IBG RAS) Ufa Scientific Centre, Ufa, Russia.
Petr V SergievDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia.
Ilya A OstermanDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia dmitrii.shiriaev@outlook.com i.osterman@skoltech.ru.ORCID https://orcid.org/0000-0001-7748-980X
Olga A DontsovaDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia.
Lomonosov Moscow State University · RUSkolkovo Institute of Science and Technology · RUAll Russia Research Institute of Automatics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial type II topoisomerases, DNA gyrase and topoisomerase IV, are targets of many antibiotics including fluoroquinolones (FQs). Unfortunately, a number of bacterial species easily acquire resistance to FQs by mutations in either DNA gyrase or topoisomerase IV genes. The emergence of resistant pathogenic strains is a global problem in healthcare, therefore, identifying alternative pathways to thwart their persistence is the current frontier in drug discovery. An attractive class of compounds is nybomycins, reported to be "reverse antibiotics" that selectively inhibit growth of some Gram-positive FQ-resistant bacteria by targeting the mutant form of DNA gyrase, while being inactive against wild-type strains with FQ-sensitive gyrases. The strong "reverse" effect was demonstrated only for a few Gram-positive organisms resistant to FQs due to the S83L/I mutation in GyrA subunit of DNA gyrase. However, the activity of nybomycins has not been extensively explored among Gram-negative species. Here, we observed that in Gram-negative

Identifiers

PMID33593838
PMCPMC8092900
OpenAlexW3132508584

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.