Evidence map›Paper›PMID 33593816›Full record

ArticleDevelopment (Cambridge, England)2021

Protein manipulation using single copies of short peptide tags in cultured cells and in

M Alessandra Vigano, Clara-Maria Ell, Manuela M M Kustermann, Gustavo Aguilar, Shinya Matsuda, Ning Zhao, Timothy J Stasevich, Markus Affolter, George Pyrowolakis

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Translation Dynamics of Single mRNAs in Live Cells.Annual review of biophysics · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. A Light-Activatable Photocaged Variant of the Ultra-High Affinity ALFA-Tag Nanobody.Chembiochem : a European journal of chemical biology · 2022
    Article
  13. Article
  14. Article
  15. Exploring cellular biochemistry with nanobodies.The Journal of biological chemistry · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

M Alessandra ViganoGrowth and Development, Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland alessandra.vigano@unibas.ch markus.affolter@unibas.ch g.pyrowolakis@biologie.uni-freiburg.de.ORCID 0000-0003-2009-0384
Clara-Maria EllSpemann Graduate School of Biology and Medicine (SGBM), University of Freiburg, 79104 Freiburg, Germany.ORCID 0000-0002-8070-3149
Manuela M M KustermannInstitute for Biology I, Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany.ORCID 0000-0002-0775-1814
Gustavo AguilarGrowth and Development, Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.
Shinya MatsudaGrowth and Development, Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.ORCID 0000-0002-7541-7914
Ning ZhaoDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO 80523, USA.
Timothy J StasevichDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO 80523, USA.ORCID 0000-0002-0151-6274
Markus AffolterGrowth and Development, Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland alessandra.vigano@unibas.ch markus.affolter@unibas.ch g.pyrowolakis@biologie.uni-freiburg.de.ORCID 0000-0002-5171-0016
George PyrowolakisInstitute for Biology I, Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany alessandra.vigano@unibas.ch markus.affolter@unibas.ch g.pyrowolakis@biologie.uni-freiburg.de.ORCID 0000-0002-2142-5943
University of Basel · CHUniversity of Freiburg · DEColorado State University · US

Funding

Quantifying the coordinated dynamics of single-gene transcription and translation in living cellsR35GM119728 · NIGMS · COLORADO STATE UNIVERSITY · PI Timothy Stasevich · 2016 to 2026
$4.2M
NIGMS NIH HHS R35 GM119728
6 · The paper itself

Abstract

Cellular development and function rely on highly dynamic molecular interactions among proteins distributed in all cell compartments. Analysis of these interactions has been one of the main topics in cellular and developmental research, and has been mostly achieved by the manipulation of proteins of interest (POIs) at the genetic level. Although genetic strategies have significantly contributed to our current understanding, targeting specific interactions of POIs in a time- and space-controlled manner or analysing the role of POIs in dynamic cellular processes, such as cell migration or cell division, would benefit from more-direct approaches. The recent development of specific protein binders, which can be expressed and function intracellularly, along with advancement in synthetic biology, have contributed to the creation of a new toolbox for direct protein manipulations. Here, we have selected a number of short-tag epitopes for which protein binders from different scaffolds have been generated and showed that single copies of these tags allowed efficient POI binding and manipulation in living cells. Using

Indexed as

AnimalsCell LineCells, CulturedDrosophila melanogasterEpitopesPeptidesProtein BindingProteinsSynthetic BiologyEpitopesPeptidesProteinsIn vivoNanobodiesPeptide bindersProtein manipulationSmall tag

Identifiers

PMID33593816
PMCPMC7990863
OpenAlexW3131037874

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.