Evidence map›Paper›PMID 33592557›Full record

ArticleBiosensors & bioelectronics2021

Dye-free spectrophotometric measurement of nucleic acid-to-protein ratio for cell-selective extracellular vesicle discrimination.

Dali Sun, Zhen Zhao, Sarah Spiegel, Yang Liu, Jia Fan, Pouya Amrollahi, Jing Hu, Christopher J Lyon, Meihua Wan, Tony Y Hu

Abstract read
In one paragraph

Article in Biosensors & bioelectronics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Dali SunDepartment of Electrical and Computer Engineering, North Dakota State University, 1411 Centennial Blvd., 101M, Fargo, ND, 58102, USA. Electronic address: dali.sun@ndsu.edu.
Zhen ZhaoDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Sarah SpiegelSchool of Biological and Health Systems Engineering, The Biodesign Institute, Arizona State University, 1001 S. McAllister Ave. B 140D, Tempe, AZ, 85287-5001, USA.
Yang LiuDepartment of Biochemistry and Molecular Biology, Tulane University School of Medicine, LA, 70112, USA.
Jia FanDepartment of Biochemistry and Molecular Biology, Tulane University School of Medicine, LA, 70112, USA.
Pouya AmrollahiSchool of Biological and Health Systems Engineering, The Biodesign Institute, Arizona State University, 1001 S. McAllister Ave. B 140D, Tempe, AZ, 85287-5001, USA.
Jing HuDepartment of Integrated Traditional Chinese and Western Medicine, West China Hospital of Sichuan University, Shichuan, 610041, China.
Christopher J LyonDepartment of Biochemistry and Molecular Biology, Tulane University School of Medicine, LA, 70112, USA.
Meihua WanDepartment of Integrated Traditional Chinese and Western Medicine, West China Hospital of Sichuan University, Shichuan, 610041, China.
Tony Y HuDepartment of Biochemistry and Molecular Biology, Tulane University School of Medicine, LA, 70112, USA. Electronic address: yhu16@tulane.edu.

Funding

Tracking and Evaluation CoreU54GM128729 · NIGMS · UNIVERSITY OF NORTH DAKOTA · PI SCHWARTZ, GARY G · 2018 to 2022
$20.3M
Direct quantitation of the circulating Mtb-peptidome for pediatric TB managementR01HD090927 · NICHD · TULANE UNIVERSITY OF LOUISIANA · PI Christopher J Lyon, Charles DeBeaux Mitchell · 2017 to 2026
$4.5M
Quantification of Circulating Antigens for Pediatric TB Diagnosis andTreatment MonitoringR01AI122932 · NIAID · METHODIST HOSPITAL RESEARCH INSTITUTE · PI HU, TONY Y. · 2016 to 2019
$1.8M
Real-time Detection of Active TB in HIV Exposed Children on CustomizedNanotrapR01AI113725 · NIAID · METHODIST HOSPITAL RESEARCH INSTITUTE · PI LABAER, JOSHUA · 2015 to 2018
$1.6M
Multiplexed quantification of circulating peptidomic signatures for EBOLA early diagnosisR21AI126361 · NIAID · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI LABAER, JOSHUA · 2017 to 2018
$373k
Using the secondary structure (beta-sheet) of exosomal proteins for noninvasive pancreatic cancer detectionR03CA252783 · NCI · NORTH DAKOTA STATE UNIVERSITY · PI SUN, DALI · 2020 to 2020
$145k
NCI NIH HHS R03 CA252783NIAID NIH HHS R01 AI113725NIAID NIH HHS R01 AI122932NIAID NIH HHS R21 AI126361NICHD NIH HHS R01 HD090927NIGMS NIH HHS U54 GM128729
6 · The paper itself

Abstract

Extracellular vesicles (EVs) can represent a novel source of disease biomarkers, and are under intensive study for their clinical potential. Most EV-based cancer diagnostic studies have focused on establishing EV assays that detect increased expression of a single cancer-associated marker or marker signatures based on multiplex detection of these biomarkers. EV biomarker readouts can be obscured by high background signal leading to false positives, and may markedly differ between analyses due to variation in sample purity during EV isolation. This can obstruct the comparisons among studies and lead to conflicting conclusions. This work reports that the nucleic acid to protein UV absorption ratio of an EV is a cell-specific EV characteristic. This EV collective attribute can be measured at low-cost to discriminate EVs derived from malignant and non-malignant cells rather than employing single markers that may be cancer- or subtype-specific. Our work also highlighted the application for accessing purity in EV preparations irrelevant to EV yield. It can be employed to distinguish from patients with and without malignant disease upon analysis of EVs isolated from their serum samples.

Indexed as

Biosensing TechniquesExtracellular VesiclesNucleic AcidsBiomarkersHumansProteinsBiomarkersNucleic AcidsProteinsCollective attributeExtracellular vesiclesPDACQuality assessment

Identifiers

PMID33592557
PMCPMC7995647

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.