Evidence map›Paper›PMID 33592195›Full record

ArticleCell systems2021

Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies.

Yufei Xiang, Zhe Sang, Lirane Bitton, Jianquan Xu, Yang Liu, Dina Schneidman-Duhovny, Yi Shi

Abstract read
In one paragraph

Article in Cell systems, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Review
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  7. Affinity-stability trade-off mechanism of residue 35 in framework region 2 of VProtein science : a publication of the Protein Society · 2025
    Article
  8. Review
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  10. Review
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  12. Article
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  15. Conformational features and interaction mechanisms of VProtein science : a publication of the Protein Society · 2023
    Article
  16. Article
  17. Article
  18. Nanobodies: Robust miniprotein binders in biomedicine.Advanced drug delivery reviews · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yufei XiangDepartment of Cell Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Zhe SangDepartment of Cell Biology, University of Pittsburgh, Pittsburgh, PA, USA; University of Pittsburgh, Carnegie Mellon University Program for Computational Biology, Pittsburgh, PA, USA.
Lirane BittonSchool of Computer Science and Engineering, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel.
Jianquan XuDepartments of Medicine and Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA.
Yang LiuDepartments of Medicine and Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA.
Dina Schneidman-DuhovnySchool of Computer Science and Engineering, Institute of Life Sciences, The Hebrew University of Jerusalem, Israel. Electronic address: dina.schneidman@mail.huji.ac.il.
Yi ShiDepartment of Cell Biology, University of Pittsburgh, Pittsburgh, PA, USA; University of Pittsburgh, Carnegie Mellon University Program for Computational Biology, Pittsburgh, PA, USA. Electronic address: yi.shi@pitt.edu.

Funding

Practices CoreUC7AI180311 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI William Paul Duprex · 2023 to 2026
$13.2M
Development of multivalent, ultrapotent nanobody cocktails for SARS-CoV-2 neutralizationR01AI163011 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI William Paul Duprex, Yi Shi · 2022 to 2026
$3.1M
Mapping the Dynamic Interactome of Ig-fold Membrane Proteins Using Nanobody-Based ToolsR35GM137905 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Yi Shi · 2020 to 2026
$2.8M
NIAID NIH HHS R01 AI163011NIAID NIH HHS UC7 AI180311NIGMS NIH HHS R35 GM137905
6 · The paper itself

Abstract

The antibody immune response is essential for the survival of mammals. However, we still lack a systematic understanding of the antibody repertoire. Here, we developed a proteomic strategy to survey, at an unprecedented scale, the landscape of antigen-engaged, circulating camelid heavy-chain antibodies, whose minimal binding fragments are called V

Indexed as

EpitopesHumansProteomicsSingle-Domain AntibodiesEpitopesSingle-Domain Antibodiesantibody immune responseantibody technologynanobodystructural modelingstructural proteomics

Identifiers

PMID33592195
PMCPMC7979497

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.