Evidence map›Paper›PMID 33591463›Full record

ArticleBiotechnology letters2021

Characterization of substrate specificity and inhibitory mechanism of bile salt hydrolase from Lactobacillus reuteri CRL 1098 using molecular docking analysis.

Ana Estela Ledesma, María Pía Taranto, Ana Yanina Bustos

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Article in Biotechnology letters, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Insight into the High-Efficiency Benzo(a)pyrene Degradation Ability ofInternational journal of molecular sciences · 2023
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ana Estela LedesmaDepartamento Académico de Química, Facultad de Ciencias Exactas y Tecnologías, Centro de Investigación en Biofísica Aplicada y Alimentos (CIBAAL-UNSE-CONICET), Universidad Nacional de Santiago del Estero, Av. Belgrano Sur 1912, 4200, Santiago del Estero, Argentina.
María Pía TarantoCentro de Referencia para Lactobacilos (CERELA-CONICET), Chacabuco 145, 4000, San Miguel de Tucumán, Argentina.
Ana Yanina BustosCentro de Investigación en Biofísica Aplicada y Alimentos (CIBAAL-UNSE-CONICET), RN 9- Km 1125, 4206, Santiago del Estero, Argentina. abustos@uspt.edu.ar.ORCID http://orcid.org/0000-0003-3314-1232

Funding

Consejo de Investigación, Universidad Nacional de Santiago del Estero 23/C136
6 · The paper itself

Abstract

objectivesTo elucidate the molecular mechanisms involved in the substrate interaction of the bile salt hydrolase of Lactobacillus reuteri CRL 1098 (LrBSH) with bile acids (BAs) and to evaluate potential enzyme inhibitors based on computer and in vitro modeling assays.

resultsAsp19, Asn79, and Asn171 participated in the LrBSH interaction with all BAs tested while Leu56 and Glu 222 played an important role in the interaction with glyco- and tauro-conjugated BAs, respectively. A great percentage of hydrophobic and polar interactions were responsible for the binding of LrBSH with glyco- and tauro-conjugated BAs, respectively. Remarkably, the four binding pocket loops participated in the substrate binding site of LrBSH unlike most of the reported BSHs. Inhibition assays showed that ascorbic acid, citric acid, penicillin G, and ciprofloxacin decreased LrBSH activity by 47.1%, 40.14%, 28.8%, and 9%, respectively. Docking analysis revealed that tetracycline and caffeic acid phenethyl ester had the low binding energy (-7.32 and -7.19 kcal/mol, respectively) and resembled the interaction pattern of GDCA (-6.88 kcal/mol) while penicillin (-6.25 kcal/mol) and ascorbic acid (-5.98 kcal/mol) interacted at a longer distance.

conclusionThis study helps to delve into the molecular mechanisms involved in the recognition of substrates and potential inhibitors of LrBSH.

Indexed as

AmidohydrolasesAmino Acid SequenceBacterial ProteinsBile Acids and SaltsBinding SitesCatalytic DomainEnzyme InhibitorsLimosilactobacillus reuteriModels, MolecularMolecular Docking SimulationProtein DomainsSubstrate SpecificityAmidohydrolasesBacterial ProteinsBile Acids and Saltscholoylglycine hydrolaseEnzyme InhibitorsBile salt hydrolaseBSH inhibitorsHomology modelingLactobacillus reuteri CRL1098Molecular docking analysis

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.