Evidence map›Paper›PMID 33590099›Full record

ArticleNucleic acids research2021

Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation.

Kyoko Ishino, Hidetoshi Hasuwa, Jun Yoshimura, Yuka W Iwasaki, Hidenori Nishihara, Naomi M Seki, Takamasa Hirano, Marie Tsuchiya, Hinako Ishizaki, Harumi Masuda and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
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  8. Advances in PIWI-piRNA function in female reproduction in mammals.Acta biochimica et biophysica Sinica · 2024
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Insights in piRNA targeting rules.Wiley interdisciplinary reviews. RNA · 2023
    Article
  16. Article
  17. Review
  18. Article
  19. The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Kyoko IshinoDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Hidetoshi HasuwaDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Jun YoshimuraDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Tokyo 113-0032, Japan.
Yuka W IwasakiDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Hidenori NishiharaSchool of Life Science and Technology, Tokyo Institute of Technology, Kanagawa 226-8501, Japan.
Naomi M SekiDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Takamasa HiranoDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Marie TsuchiyaDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Hinako IshizakiNational Institute of Genetics, Mishima 411-8540, Japan.
Harumi MasudaDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Tae KuramotoSchool of Life Science and Technology, Tokyo Institute of Technology, Kanagawa 226-8501, Japan.
Kuniaki SaitoDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Yasubumi SakakibaraDepartment of Biosciences and Informatics, Keio University, Yokohama 223-8522, Japan.
Atsushi ToyodaNational Institute of Genetics, Mishima 411-8540, Japan.
Takehiko ItohSchool of Life Science and Technology, Tokyo Institute of Technology, Kanagawa 226-8501, Japan.
Mikiko C SiomiGraduate School of Science, The University of Tokyo, Tokyo 113-0032, Japan.
Shinichi MorishitaDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Tokyo 113-0032, Japan.
Haruhiko SiomiDepartment of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan.
Keio University · JPNational Institute of Genetics · JPThe University of Tokyo · JPTokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In animal gonads, transposable elements are actively repressed to preserve genome integrity through the PIWI-interacting RNA (piRNA) pathway. In mice, piRNAs are abundantly expressed in male germ cells, and form effector complexes with three distinct PIWIs. The depletion of individual Piwi genes causes male-specific sterility with no discernible phenotype in female mice. Unlike mice, most other mammals have four PIWI genes, some of which are expressed in the ovary. Here, purification of PIWI complexes from oocytes of the golden hamster revealed that the size of the PIWIL1-associated piRNAs changed during oocyte maturation. In contrast, PIWIL3, an ovary-specific PIWI in most mammals, associates with short piRNAs only in metaphase II oocytes, which coincides with intense phosphorylation of the protein. An improved high-quality genome assembly and annotation revealed that PIWIL1- and PIWIL3-associated piRNAs appear to share the 5'-ends of common piRNA precursors and are mostly derived from unannotated sequences with a diminished contribution from TE-derived sequences, most of which correspond to endogenous retroviruses. Our findings show the complex and dynamic nature of biogenesis of piRNAs in hamster oocytes, and together with the new genome sequence generated, serve as the foundation for developing useful models to study the piRNA pathway in mammalian oocytes.

Indexed as

AnimalsArgonaute ProteinsFemaleGenomicsMaleMesocricetusMetaphaseOocytesPhosphorylationRNA, Small InterferingTestisArgonaute ProteinsRNA, Small Interfering

Identifiers

PMID33590099
PMCPMC7969018
OpenAlexW3131363588

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.