Evidence map›Paper›PMID 33589840›Full record

SynthesisNature genetics2021

Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.

Jeremy Schwartzentruber, Sarah Cooper, Jimmy Z Liu, Inigo Barrio-Hernandez, Erica Bello, Natsuhiko Kumasaka, Adam M H Young, Robin J M Franklin, Toby Johnson, Karol Estrada and 3 more

Erratum issuedOpen access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 354 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
354citing papers in PubMed, 4 pooled it
74.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

354 citing papers in PubMed, 4 syntheses or guidelines pooled it, 530 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Genome-wide meta-analysis identifies ancestry-specific loci for Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Pooled it
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Shared genetic architecture between DTI-ALPS traits and neurodegenerative diseases.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

294 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Jeremy SchwartzentruberEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK. jeremys@ebi.ac.uk.ORCID http://orcid.org/0000-0002-6183-2092
Sarah CooperOpen Targets, Wellcome Genome Campus, Cambridge, UK.
Jimmy Z LiuBiogen, Cambridge, MA, USA.
Inigo Barrio-HernandezEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0002-5686-0451
Erica BelloOpen Targets, Wellcome Genome Campus, Cambridge, UK.
Natsuhiko KumasakaWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0002-3557-0375
Adam M H YoungWellcome-Medical Research Council Cambridge Stem Cell Institute, Cambridge Biomedical Campus, University of Cambridge, Cambridge, UK.
Robin J M FranklinWellcome-Medical Research Council Cambridge Stem Cell Institute, Cambridge Biomedical Campus, University of Cambridge, Cambridge, UK.
Toby JohnsonTarget Sciences-R&D, GSK Medicines Research Centre, Stevenage, UK.
Karol EstradaBioMarin Pharmaceutical, San Rafael, CA, USA.
Daniel J GaffneyOpen Targets, Wellcome Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0002-1529-1862
Pedro BeltraoEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0002-2724-7703
Andrew BassettOpen Targets, Wellcome Genome Campus, Cambridge, UK. ab42@sanger.ac.uk.ORCID http://orcid.org/0000-0003-1632-9137
Wellcome Sanger Institute · GBEuropean Bioinformatics Institute · GBWellcome/MRC Cambridge Stem Cell Institute · GBAge UK · GBBiogen (United States) · USBioMarin (United States) · US

Funding

Medical Research Council MC_PC_17230Multiple Sclerosis Society 50Wellcome Trust 203151Wellcome Trust 203151/Z/16/ZWellcome Trust 206194
6 · The paper itself

Abstract

Genome-wide association studies have discovered numerous genomic loci associated with Alzheimer's disease (AD); yet the causal genes and variants are incompletely identified. We performed an updated genome-wide AD meta-analysis, which identified 37 risk loci, including new associations near CCDC6, TSPAN14, NCK2 and SPRED2. Using three SNP-level fine-mapping methods, we identified 21 SNPs with >50% probability each of being causally involved in AD risk and others strongly suggested by functional annotation. We followed this with colocalization analyses across 109 gene expression quantitative trait loci datasets and prioritization of genes by using protein interaction networks and tissue-specific expression. Combining this information into a quantitative score, we found that evidence converged on likely causal genes, including the above four genes, and those at previously discovered AD loci, including BIN1, APH1B, PTK2B, PILRA and CASS4.

Indexed as

Adaptor Proteins, Signal TransducingAlzheimer DiseaseChromosome MappingCytoskeletal ProteinsGene ExpressionGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansLinkage DisequilibriumMicrogliaOncogene ProteinsPolymorphism, Single NucleotideProtein Interaction MapsQuantitative Trait LociRisk FactorsTetraspaninsAdaptor Proteins, Signal TransducingCCDC6 protein, humanCytoskeletal ProteinsNCK2 protein, humanOncogene ProteinsTetraspaninsTSPAN14 protein, human

Identifiers

PMID33589840
PMCPMC7610386
OpenAlexW3115346491

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.