Evidence map›Paper›PMID 33589814›Full record

ArticleNature structural & molecular biology2021

BRCA1/BARD1 site-specific ubiquitylation of nucleosomal H2A is directed by BARD1.

Samuel R Witus, Anika L Burrell, Daniel P Farrell, Jianming Kang, Meiling Wang, Jesse M Hansen, Alex Pravat, Lisa M Tuttle, Mikaela D Stewart, Peter S Brzovic and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. Pooled it
  2. Precision Chemistry for Protein Lysine Modification.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Review
  3. Article
  4. Article
  5. Assessing the Clinical Relevance ofCurrent oncology (Toronto, Ont.) · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Saturation genome editing ofmedRxiv : the preprint server for health sciences · 2025
    Article
  11. Article
  12. Article
  13. PathogenicThe journal of physical chemistry. B · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. DOT1L-mediated RAP80 methylation promotes BRCA1 recruitment to elicit DNA repair.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Samuel R WitusDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-1907-8484
Anika L BurrellDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Daniel P FarrellDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-7024-7998
Jianming KangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Meiling WangDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, TX, USA.
Jesse M HansenDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Alex PravatDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Lisa M TuttleDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-8889-232X
Mikaela D StewartDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Peter S BrzovicDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Champak ChatterjeeDepartment of Chemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-5772-4438
Weixing ZhaoDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, TX, USA.
Frank DiMaioDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Justin M KollmanDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-0350-5827
Rachel E KlevitDepartment of Biochemistry, University of Washington, Seattle, WA, USA. klevit@uw.edu.ORCID http://orcid.org/0000-0002-3476-969X
University of Washington · USThe University of Texas Health Science Center at San Antonio · USTexas Christian University · US

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Structural and Functional Characterization of BRCA1/BARD1R01GM088055 · NIGMS · UNIVERSITY OF WASHINGTON · PI KLEVIT, RACHEL E · 2009 to 2020
$6.5M
Protein structure determination from low-resolution experimental dataR01GM123089 · NIGMS · UNIVERSITY OF WASHINGTON · PI DIMAIO, FRANK P · 2017 to 2025
$2.6M
Chemical Strategies to Investigate Gene Regulation By Histone SumoylationR01GM110430 · NIGMS · UNIVERSITY OF WASHINGTON · PI CHATTERJEE, CHAMPAK · 2014 to 2022
$2.5M
Acquisition of a high resolution, high throughput cryo-electron microscopeS10OD023476 · OD · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2017 to 2017
$2.0M
IMPDH1 structure and function in the healthy and diseased retinaF31EY030732 · NEI · UNIVERSITY OF WASHINGTON · PI BURRELL, ANIKA LAUREN · 2019 to 2021
$116k
NEI NIH HHS F31 EY030732NIGMS NIH HHS R01 GM088055NIGMS NIH HHS R01 GM110430NIGMS NIH HHS R01 GM123089NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM008268NIH HHS S10 OD023476
6 · The paper itself

Abstract

Mutations in the E3 ubiquitin ligase RING domains of BRCA1/BARD1 predispose carriers to breast and ovarian cancers. We present the structure of the BRCA1/BARD1 RING heterodimer with the E2 enzyme UbcH5c bound to its cellular target, the nucleosome, along with biochemical data that explain how the complex selectively ubiquitylates lysines 125, 127 and 129 in the flexible C-terminal tail of H2A in a fully human system. The structure reveals that a novel BARD1-histone interface couples to a repositioning of UbcH5c compared to the structurally similar PRC1 E3 ligase Ring1b/Bmi1 that ubiquitylates H2A Lys119 in nucleosomes. This interface is sensitive to both H3 Lys79 methylation status and mutations found in individuals with cancer. Furthermore, NMR reveals an unexpected mode of E3-mediated substrate regulation through modulation of dynamics in the C-terminal tail of H2A. Our findings provide insight into how E3 ligases preferentially target nearby lysine residues in nucleosomes by a steric occlusion and distancing mechanism.

Indexed as

UbiquitinationBinding SitesBRCA1 ProteinCatalytic DomainCryoelectron MicroscopyHistonesHumansLysineModels, MolecularNucleosomesProtein BindingReproducibility of ResultsTumor Suppressor ProteinsUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesBARD1 protein, humanBRCA1 ProteinBRCA1 protein, humanHistonesLysineNucleosomesTumor Suppressor ProteinsUBE2D3 protein, humanUbiquitin-Conjugating EnzymesUbiquitin-Protein Ligases

Identifiers

PMID33589814
PMCPMC8007219
OpenAlexW3133450021

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.