Evidence map›Paper›PMID 33589611›Full record

ArticleNature communications2021

Proteome-wide and matrisome-specific alterations during human pancreas development and maturation.

Zihui Li, Daniel M Tremmel, Fengfei Ma, Qinying Yu, Min Ma, Daniel G Delafield, Yatao Shi, Bin Wang, Samantha A Mitchell, Austin K Feeney and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 41 citations in OpenAlex.

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  19. Emergence of mass spectrometry detergents for membrane proteomics.Analytical and bioanalytical chemistry · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Zihui Li *Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0003-0865-4634
Daniel M Tremmel *Department of Surgery, Division of Transplantation, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-1725-5582
Fengfei MaSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0003-4202-4724
Qinying YuSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, USA.
Min MaSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, USA.
Daniel G DelafieldDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0003-2989-9833
Yatao ShiSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, USA.
Bin WangSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, USA.
Samantha A MitchellDepartment of Surgery, Division of Transplantation, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.
Austin K FeeneyDepartment of Surgery, Division of Transplantation, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.
Vansh S JainDepartment of Surgery, Division of Transplantation, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-9930-9838
Sara Dutton SackettDepartment of Surgery, Division of Transplantation, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0003-0738-4767
Jon S OdoricoDepartment of Surgery, Division of Transplantation, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA. jon@surgery.wisc.edu.ORCID http://orcid.org/0000-0003-1096-464X
Lingjun LiDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA. lingjun.li@wisc.edu.ORCID http://orcid.org/0000-0003-0056-3869
University of Wisconsin–Madison · US

Funding

University of Wisconsin Institute for Clinical and Translational ResearchUL1TR002373 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI ELIZABETH S BURNSIDE, Allan R. Brasier · 2017 to 2026
$75.9M
TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
Mass Spectrometric Studies of Neuropeptides in FeedingR01DK071801 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI LINGJUN LI · 2006 to 2026
$6.7M
Di-Leu-enabled multiplexed quantitation for biomarker discovery and validation in Alzheimer's diseaseRF1AG052324 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2018 to 2018
$2.4M
Acquisition of a High-Field Dual Source FTICR-MS for Pharmaceutical ResearchS10RR029531 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2011 to 2011
$2.1M
Transformational platform for regenerating autologous transplantable endocrine tissue from human pancreatic matrix and pluripotent stem cellsR21AI126419 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI ODORICO, JON S · 2016 to 2017
$408k
Probing the human pancreatic and islet matrisomeF31DK125021 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI TREMMEL, DANIEL M · 2020 to 2021
$69k
NCATS NIH HHS UL1 TR002373NCRR NIH HHS S10 RR029531NIAID NIH HHS R21 AI126419NIA NIH HHS RF1 AG052324NIDDK NIH HHS F31 DK125021NIDDK NIH HHS R01 DK071801NIGMS NIH HHS P41 GM108538
6 · The paper itself

Abstract

The extracellular matrix (ECM) is unique to each tissue and capable of guiding cell differentiation, migration, morphology, and function. The ECM proteome of different developmental stages has not been systematically studied in the human pancreas. In this study, we apply mass spectrometry-based quantitative proteomics strategies using N,N-dimethyl leucine isobaric tags to delineate proteome-wide and ECM-specific alterations in four age groups: fetal (18-20 weeks gestation), juvenile (5-16 years old), young adults (21-29 years old) and older adults (50-61 years old). We identify 3,523 proteins including 185 ECM proteins and quantify 117 of them. We detect previously unknown proteome and matrisome features during pancreas development and maturation. We also visualize specific ECM proteins of interest using immunofluorescent staining and investigate changes in ECM localization within islet or acinar compartments. This comprehensive proteomics analysis contributes to an improved understanding of the critical roles that ECM plays throughout human pancreas development and maturation.

Indexed as

Gene Expression Regulation, DevelopmentalAdolescentAdultChildChild, PreschoolChromatography, LiquidExtracellular MatrixExtracellular Matrix ProteinsFemaleFetusFluorescent Antibody TechniqueGene OntologyHumansMaleMiddle AgedMolecular Sequence AnnotationExtracellular Matrix ProteinsProteome

Identifiers

PMID33589611
PMCPMC7884717
OpenAlexW3131210231

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.