Evidence map›Paper›PMID 33588037›Full record

ArticleGene2021

Transmission dynamics of SARS-CoV-2 on the Diamond Princess uncovered using viral genome sequence analysis.

Kunikazu Hoshino, Tatsuji Maeshiro, Nao Nishida, Masaya Sugiyama, Jiro Fujita, Takashi Gojobori, Masashi Mizokami

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Gene, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kunikazu HoshinoDepartment of Infectious, Respiratory, and Digestive Medicine, University of the Ryukyus, 207 Uehara, Nishihara, Okinawa 903-0215, Japan; Genome Medical Sciences Project, National Center for Global Health and Medicine, 1-7-1 Kohnodai, Ichikawa, Chiba 272-8516, Japan. Electronic address: kuhoshino-ryk@umin.ac.jp.
Tatsuji MaeshiroDepartment of Infectious, Respiratory, and Digestive Medicine, University of the Ryukyus, 207 Uehara, Nishihara, Okinawa 903-0215, Japan. Electronic address: f994908@med.u-ryukyu.ac.jp.
Nao NishidaGenome Medical Sciences Project, National Center for Global Health and Medicine, 1-7-1 Kohnodai, Ichikawa, Chiba 272-8516, Japan. Electronic address: nishida-75@umin.ac.jp.
Masaya SugiyamaGenome Medical Sciences Project, National Center for Global Health and Medicine, 1-7-1 Kohnodai, Ichikawa, Chiba 272-8516, Japan. Electronic address: msugiyama@hosp.ncgm.go.jp.
Jiro FujitaDepartment of Infectious, Respiratory, and Digestive Medicine, University of the Ryukyus, 207 Uehara, Nishihara, Okinawa 903-0215, Japan. Electronic address: fujita@med.u-ryukyu.ac.jp.
Takashi GojoboriComputational Bioscience Research Center, Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, 4700 King Abdullah University of Science and Technology, 23955-6900, Saudi Arabia. Electronic address: takashi.gojobori@kaust.edu.sa.
Masashi MizokamiGenome Medical Sciences Project, National Center for Global Health and Medicine, 1-7-1 Kohnodai, Ichikawa, Chiba 272-8516, Japan. Electronic address: mmizokami@hospk.ncgm.go.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An outbreak of coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) occurred aboard the Diamond Princess cruise ship between her January 20 departure and late February 2020. Here, we used phylodynamic analyses to investigate the transmission dynamics of SARS-CoV-2 during the outbreak. Using a Bayesian coalescent-based method, the estimated mean nucleotide substitution rate of 240 SARS-CoV-2 whole-genome sequences was approximately 7.13 × 10

Indexed as

Bayes TheoremCOVID-19Disease OutbreaksHumansPhylogenyPolymorphism, Single NucleotideQuarantineRNA, ViralSARS-CoV-2Sequence Analysis, RNAShipsWhole Genome SequencingRNA, ViralConfined settingsCruise shipEffective reproductive numberNucleotide substitution rateOutbreakPopulation dynamicsSARS-CoV-2

Identifiers

PMID33588037
PMCPMC7880849

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.