Evidence map›Paper›PMID 33586810›Full record

ArticleThe EMBO journal2021

Non-canonical autophagy functions of ATG16L1 in epithelial cells limit lethal infection by influenza A virus.

Yingxue Wang, Parul Sharma, Matthew Jefferson, Weijiao Zhang, Ben Bone, Anja Kipar, David Bitto, Janine L Coombes, Timothy Pearson, Angela Man and 9 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 71 citations in OpenAlex.

  1. Emerging mechanisms of ATG8-independent non-canonical autophagy.Journal of physiology and biochemistry · 2026
    Review
  2. Review
  3. Article
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  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. ATG16L1 controls mammalian vacuolar proton ATPase.The Journal of cell biology · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
  17. Review
  18. Canonical and noncanonical autophagy: involvement in Parkinson's disease.Frontiers in cell and developmental biology · 2025
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 3 countries.

Yingxue WangNorwich Medical School, University of East Anglia, Norwich, UK.
Parul SharmaDepartment of Infection Biology and Microbiomes, University of Liverpool, Liverpool, UK.
Matthew JeffersonNorwich Medical School, University of East Anglia, Norwich, UK.
Weijiao ZhangNorwich Medical School, University of East Anglia, Norwich, UK.
Ben BoneNorwich Medical School, University of East Anglia, Norwich, UK.
Anja KiparDepartment of Infection Biology and Microbiomes, University of Liverpool, Liverpool, UK.
David BittoSchool of Cellular and Molecular Medicine, Faculty of Life Sciences, University of Bristol, Bristol, UK.
Janine L CoombesDepartment of Infection Biology and Microbiomes, University of Liverpool, Liverpool, UK.
Timothy PearsonNorwich Medical School, University of East Anglia, Norwich, UK.
Angela ManEarlham Institute, Norwich, UK.ORCID 0000-0002-9596-0068
Alex ZhekovaNorwich Medical School, University of East Anglia, Norwich, UK.
Yongping BaoNorwich Medical School, University of East Anglia, Norwich, UK.
Ralph A TrippDepartment of Infectious Disease, University of Georgia, Georgia, USA.
Simon R CardingNorwich Medical School, University of East Anglia, Norwich, UK.ORCID 0000-0002-2383-9701
Yohei YamauchiSchool of Cellular and Molecular Medicine, Faculty of Life Sciences, University of Bristol, Bristol, UK.
Ulrike MayerSchool of Biological Sciences, University of East Anglia, Norwich, UK.ORCID 0000-0003-2328-0052
Penny P PowellNorwich Medical School, University of East Anglia, Norwich, UK.ORCID 0000-0002-5347-0490
James P StewartDepartment of Infection Biology and Microbiomes, University of Liverpool, Liverpool, UK.ORCID 0000-0002-8928-2037
Thomas WilemanNorwich Medical School, University of East Anglia, Norwich, UK.ORCID 0000-0002-9033-2580
University of East Anglia · GBUniversity of Liverpool · GBUniversity of Bristol · GBEarlham Institute · GBUniversity of Georgia · US

Funding

Biotechnology and Biological Sciences Research Council BBS/E/F/000PR10355
6 · The paper itself

Abstract

Influenza A virus (IAV) and SARS-CoV-2 (COVID-19) cause pandemic infections where cytokine storm syndrome and lung inflammation lead to high mortality. Given the high social and economic cost of respiratory viruses, there is an urgent need to understand how the airways defend against virus infection. Here we use mice lacking the WD and linker domains of ATG16L1 to demonstrate that ATG16L1-dependent targeting of LC3 to single-membrane, non-autophagosome compartments - referred to as non-canonical autophagy - protects mice from lethal IAV infection. Mice with systemic loss of non-canonical autophagy are exquisitely sensitive to low-pathogenicity IAV where extensive viral replication throughout the lungs, coupled with cytokine amplification mediated by plasmacytoid dendritic cells, leads to fulminant pneumonia, lung inflammation and high mortality. IAV was controlled within epithelial barriers where non-canonical autophagy reduced IAV fusion with endosomes and activation of interferon signalling. Conditional mouse models and ex vivo analysis showed that protection against IAV infection of lung was independent of phagocytes and other leucocytes. This establishes non-canonical autophagy in airway epithelial cells as a novel innate defence that restricts IAV infection and lethal inflammation at respiratory surfaces.

Indexed as

Sequence DeletionAlveolar Epithelial CellsAnimalsAutophagyAutophagy-Related ProteinsChick EmbryoCytokinesDogsInfluenza A virusMadin Darby Canine Kidney CellsMiceMicrotubule-Associated ProteinsOrthomyxoviridae InfectionsProtein DomainsVirus ReplicationAtg16l1 protein, mouseAutophagy-Related ProteinsCytokinesMap1lc3b protein, mouseMicrotubule-Associated ProteinsATG16L1 WD Domaincytokine storminfluenzaintrinsic defencenon-canonical autophagy

Identifiers

PMID33586810
PMCPMC7957399
OpenAlexW3132090045

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.