Evidence map›Paper›PMID 33585863›Full record

ArticleG3 (Bethesda, Md.)2021

Genomic analyses of two Italian oyster mushroom Pleurotus pulmonarius strains.

Guillermo Vidal-Diez de Ulzurrun, Yi-Yun Lee, Jason E Stajich, Erich M Schwarz, Yen-Ping Hsueh

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Genomic, Proteomic, and Biochemical Study ofJournal of agricultural and food chemistry · 2025
    Article
  3. High-Yield-Related Genes Participate in Mushroom Production.Journal of fungi (Basel, Switzerland) · 2024
    Review
  4. Article
  5. OMICS and Other Advanced Technologies in Mycological Applications.Journal of fungi (Basel, Switzerland) · 2023
    Review
  6. Article
  7. Genetic and Chemical Diversity of Edible MushroomBioMed research international · 2022
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Guillermo Vidal-Diez de UlzurrunInstitute of Molecular Biology, Academia Sinica, 128 Academia Road, Section 2, Nangang, Taipei 115, Taiwan.
Yi-Yun LeeInstitute of Molecular Biology, Academia Sinica, 128 Academia Road, Section 2, Nangang, Taipei 115, Taiwan.
Jason E StajichDepartment of Microbiology and Plant Pathology, University of California, Riverside, 900 University Ave. Riverside, CA 92521, USA.
Erich M SchwarzDepartment of Molecular Biology and Genetics, Cornell University, Biotechnology 351, 526 Campus Road, Ithaca, NY 14853-2703, USA.
Yen-Ping HsuehInstitute of Molecular Biology, Academia Sinica, 128 Academia Road, Section 2, Nangang, Taipei 115, Taiwan.
National Taiwan University · TWCornell University · USInstitute of Molecular Biology, Academia Sinica · TWUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pleurotus mushrooms are among the most cultivated fungi in the world and are highly valuable for food, medicine, and biotechnology industries. Furthermore, Pleurotus species are carnivorous fungi; they can rapidly paralyze and kill nematodes when nutrient-deprived. The predator-prey interactions between Pleurotus and nematodes are still widely unexplored. Moreover, the molecular mechanisms and the genes involved in the carnivorous behavior of Pleurotus mushrooms remain a mystery. We are attempting to understand the interactions between Pleurotus mushrooms and their nematode prey through genetic and genomic analyses. Two single spores (ss2 and ss5) isolated from a fruiting body of Pleurotus pulmonarius exhibited significant differences in growth and toxicity against nematodes. Thus, using PacBio long reads, we assembled and annotated two high-quality genomes for these two isolates of P. pulmonarius. Each of these assemblies contains 23 scaffolds, including 6 (ss2) and 8 (ss5) telomere-to-telomere scaffolds, and they are among the most complete assembled genomes of the Pleurotus species. Comparative analyses identified the genomic differences between the two P. pulmonarius strains. In sum, this work provides a genomic resource that will be invaluable for better understanding the Italian oyster mushroom P. pulmonarius.

Indexed as

AgaricalesPleurotusGenomicsItalynematophagous fungioyster mushroomPleurotus pulmonarius

Identifiers

PMID33585863
PMCPMC8022975
OpenAlexW3127163432

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.