Evidence map›Paper›PMID 33580175›Full record

ArticleCommunications biology2021

Immunoreactive peptide maps of SARS-CoV-2.

Nischay Mishra, Xi Huang, Shreyas Joshi, Cheng Guo, James Ng, Riddhi Thakkar, Yongjian Wu, Xin Dong, Qianlin Li, Richard S Pinapati and 6 more

Erratum issuedAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
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  7. Pathogen Discovery in the Post-COVID Era.Pathogens (Basel, Switzerland) · 2024
    Review
  8. Article
  9. Article
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  11. Article
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  17. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Nischay Mishra *Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA. nm2641@cumc.columbia.edu.ORCID http://orcid.org/0000-0002-1177-9641
Xi Huang *Sun Yat-sen University, Guangzhou, Guangdong Province, China.ORCID http://orcid.org/0000-0002-3153-5900
Shreyas JoshiCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Cheng GuoCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
James NgCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Riddhi ThakkarCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Yongjian WuSun Yat-sen University, Guangzhou, Guangdong Province, China.
Xin DongSun Yat-sen University, Guangzhou, Guangdong Province, China.
Qianlin LiSun Yat-sen University, Guangzhou, Guangdong Province, China.
Richard S PinapatiNimble Therapeutics Inc, Madison, WI, USA.ORCID http://orcid.org/0000-0001-7763-4800
Eric SullivanNimble Therapeutics Inc, Madison, WI, USA.ORCID http://orcid.org/0000-0003-4782-7067
Adrian CaciulaCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Rafal TokarzCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Thomas BrieseCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Jiahai LuSun Yat-sen University, Guangzhou, Guangdong Province, China. lujiahai@mail.sysu.edu.cn.
W Ian LipkinCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA. wil2001@cumc.columbia.edu.ORCID http://orcid.org/0000-0002-8768-9386

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Serodiagnosis of SARS-CoV-2 infection is impeded by immunological cross-reactivity among the human coronaviruses (HCoVs): SARS-CoV-2, SARS-CoV-1, MERS-CoV, OC43, 229E, HKU1, and NL63. Here we report the identification of humoral immune responses to SARS-CoV-2 peptides that may enable discrimination between exposure to SARS-CoV-2 and other HCoVs. We used a high-density peptide microarray and plasma samples collected at two time points from 50 subjects with SARS-CoV-2 infection confirmed by qPCR, samples collected in 2004-2005 from 11 subjects with IgG antibodies to SARS-CoV-1, 11 subjects with IgG antibodies to other seasonal human coronaviruses (HCoV), and 10 healthy human subjects. Through statistical modeling with linear regression and multidimensional scaling we identified specific peptides that were reassembled to identify 29 linear SARS-CoV-2 epitopes that were immunoreactive with plasma from individuals who had asymptomatic, mild or severe SARS-CoV-2 infections. Larger studies will be required to determine whether these peptides may be useful in serodiagnostics.

Indexed as

Peptide MappingAmino Acid SequenceAnimalsChiropteraCOVID-19EpitopesHumansImmunoglobulin GPeptidesProteomeSARS-CoV-2EpitopesImmunoglobulin GPeptidesProteome

Identifiers

PMID33580175
PMCPMC7881038

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.