Evidence map›Paper›PMID 33579952›Full record

ArticleNature communications2021

C. elegans germ granules require both assembly and localized regulators for mRNA repression.

Scott Takeo Aoki, Tina R Lynch, Sarah L Crittenden, Craig A Bingman, Marvin Wickens, Judith Kimble

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. bioRxiv : the preprint server for biology · 2026
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  10. eIF4E assembly intobioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Scott Takeo AokiDepartment of Biochemistry and Molecular Biology, School of Medicine, Indiana University, Indianapolis, IN, USA. staoki@iu.edu.
Tina R LynchDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Sarah L CrittendenDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Craig A BingmanDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-3073-5089
Marvin WickensDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-0593-5740
Judith KimbleDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA. jekimble@wisc.edu.ORCID http://orcid.org/0000-0001-5622-2073
University of Wisconsin–Madison · USHoward Hughes Medical Institute · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
FUNCTION OF POLY(A) AND 3'UTRSR01GM050942 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 1994 to 2020
$8.3M
Partnership for High-Throughput Enabled Biology of the Mitochondrial ProteomeU01GM094622 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2010 to 2014
$7.8M
The Transmembrane Protein CenterU54GM094584 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 2010 to 2014
$4.6M
Enzyme Discovery for Natural Product BiosynthesisU01GM098248 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PHILLIPS, GEORGE NEAL · 2011 to 2015
$2.8M
Molecular regulation of germline developmentR01GM134119 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KIMBLE, JUDITH · 2019 to 2022
$2.2M
The mechanics and dynamics of RNP granulesK99HD081208 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI AOKI, SCOTT T · 2015 to 2016
$202k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA060553NICHD NIH HHS K99 HD081208NIGMS NIH HHS R01 GM050942NIGMS NIH HHS R01 GM134119NIGMS NIH HHS U01 GM094622NIGMS NIH HHS U01 GM098248NIGMS NIH HHS U54 GM094584
6 · The paper itself

Abstract

Cytoplasmic RNA-protein (RNP) granules have diverse biophysical properties, from liquid to solid, and play enigmatic roles in RNA metabolism. Nematode P granules are paradigmatic liquid droplet granules and central to germ cell development. Here we analyze a key P granule scaffolding protein, PGL-1, to investigate the functional relationship between P granule assembly and function. Using a protein-RNA tethering assay, we find that reporter mRNA expression is repressed when recruited to PGL-1. We determine the crystal structure of the PGL-1 N-terminal region to 1.5 Å, discover its dimerization, and identify key residues at the dimer interface. Mutations of those interface residues prevent P granule assembly in vivo, de-repress PGL-1 tethered mRNA, and reduce fertility. Therefore, PGL-1 dimerization lies at the heart of both P granule assembly and function. Finally, we identify the P granule-associated Argonaute WAGO-1 as crucial for repression of PGL-1 tethered mRNA. We conclude that P granule function requires both assembly and localized regulators.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCytoplasmic GranulesEpigenetic RepressionGene Expression RegulationGerm CellsPromoter Regions, GeneticProtein ConformationRNA-Binding ProteinsRNA, MessengerCaenorhabditis elegans ProteinsPGL-1 protein, C elegansRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID33579952
PMCPMC7881195
OpenAlexW3128323326

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.