Evidence map›Paper›PMID 33579933›Full record

ArticleNature communications2021

Granulovirus PK-1 kinase activity relies on a side-to-side dimerization mode centered on the regulatory αC helix.

Michael R Oliver, Christopher R Horne, Safal Shrestha, Jeremy R Keown, Lung-Yu Liang, Samuel N Young, Jarrod J Sandow, Andrew I Webb, David C Goldstone, Isabelle S Lucet and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Michael R Oliver *School of Biological Sciences, University of Auckland, Auckland, New Zealand.
Christopher R Horne *Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID 0000-0003-1318-514X
Safal ShresthaInstitute of Bioinformatics, University of Georgia, Athens, GA, USA.
Jeremy R KeownSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.ORCID 0000-0003-0159-9257
Lung-Yu LiangWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Samuel N YoungWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Jarrod J SandowWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID 0000-0001-5684-8236
Andrew I WebbWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID 0000-0001-5061-6995
David C GoldstoneSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.ORCID 0000-0003-0069-9408
Isabelle S LucetWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID 0000-0002-8563-8753
Natarajan KannanInstitute of Bioinformatics, University of Georgia, Athens, GA, USA.
Peter MetcalfSchool of Biological Sciences, University of Auckland, Auckland, New Zealand. peter.metcalf@auckland.ac.nz.ORCID 0000-0002-1550-0783
James M MurphyWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia. jamesm@wehi.edu.au.ORCID 0000-0003-0195-3949
The University of Melbourne · AUUniversity of Auckland · NZUniversity of Georgia · USCentre for Human Genetics · GBWalter and Eliza Hall Institute of Medical Research · AU

Funding

Functional Annotation of Natural and Disease Variants in Tryosine KinasesR01GM114409 · NIGMS · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN · 2015 to 2020
$1.6M
NIGMS NIH HHS R01 GM114409
6 · The paper itself

Abstract

The life cycle of Baculoviridae family insect viruses depends on the viral protein kinase, PK-1, to phosphorylate the regulatory protein, p6.9, to induce baculoviral genome release. Here, we report the crystal structure of Cydia pomenella granulovirus PK-1, which, owing to its likely ancestral origin among host cell AGC kinases, exhibits a eukaryotic protein kinase fold. PK-1 occurs as a rigid dimer, where an antiparallel arrangement of the αC helices at the dimer core stabilizes PK-1 in a closed, active conformation. Dimerization is facilitated by C-lobe:C-lobe and N-lobe:N-lobe interactions between protomers, including the domain-swapping of an N-terminal helix that crowns a contiguous β-sheet formed by the two N-lobes. PK-1 retains a dimeric conformation in solution, which is crucial for catalytic activity. Our studies raise the prospect that parallel, side-to-side dimeric arrangements that lock kinase domains in a catalytically-active conformation could function more broadly as a regulatory mechanism among eukaryotic protein kinases.

Indexed as

DimerizationBaculoviridaeCrystallography, X-RayGranulovirusMolecular Dynamics SimulationPhosphorylationProtein ConformationProtein KinasesProtein SubunitsViral ProteinsProtein KinasesProtein SubunitsViral Proteins

Identifiers

PMID33579933
PMCPMC7881018
OpenAlexW3128095137

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.