Evidence map›Paper›PMID 33579919›Full record

SynthesisNature communications2021

Cross-cancer evaluation of polygenic risk scores for 16 cancer types in two large cohorts.

Rebecca E Graff, Taylor B Cavazos, Khanh K Thai, Linda Kachuri, Sara R Rashkin, Joshua D Hoffman, Stacey E Alexeeff, Maruta Blatchins, Travis J Meyers, Lancelote Leong and 11 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 4 pooled it
15.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 4 syntheses or guidelines pooled it, 123 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Can polygenic risk scores contribute to cost-effective cancer screening? A systematic review.Genetics in medicine : official journal of the American College of Medical Genetics · 2022
    Pooled it
  4. Pooled it
  5. Article
  6. Article
  7. Article
  8. Polygenic risk scores in cancer.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2026
    Article
  9. Integrated Clinicogenomic Risk Modeling for Metachronous Second Primary Cancers.medRxiv : the preprint server for health sciences · 2026
    Article
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 2 institutions in 1 country.

Rebecca E GraffDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0003-0316-8303
Taylor B CavazosProgram in Biological and Medical Informatics, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0003-3537-2608
Khanh K ThaiDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Linda KachuriDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.
Sara R RashkinDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0001-5542-6891
Joshua D HoffmanDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.
Stacey E AlexeeffDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Maruta BlatchinsDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.ORCID 0000-0002-7330-5900
Travis J MeyersDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.
Lancelote LeongDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.
Caroline G TaiDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.
Nima C EmamiDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.
Douglas A CorleyDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Lawrence H KushiDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.ORCID 0000-0001-9136-1175
Elad ZivHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA, USA.
Stephen K Van Den EedenDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.ORCID 0000-0002-5599-8387
Eric JorgensonDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.ORCID 0000-0002-5829-8191
Thomas J HoffmannDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0001-6893-4449
Laurel A HabelDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
John S WitteDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA. jwitte@ucsf.edu.
Lori C SakodaDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA. lori.sakoda@kp.org.ORCID 0000-0002-0900-5735
Kaiser Permanente · USUniversity of California, San Francisco · US

Funding

A Resource for Genetic Epidemiology Research in Adult Health and AgingRC2AG036607 · NIA · KAISER FOUNDATION RESEARCH INSTITUTE · PI RISCH, NEIL J., SCHAEFER, CATHERINE ANN · 2009 to 2010
$24.8M
BMI Bioinformatics Training GrantsT32GM067547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, RYAN D. · 2003 to 2022
$6.6M
Training in Molecular& Genetic Epidemiology of CancerR25CA112355 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTE, JOHN S. · 2005 to 2018
$6.5M
Genetic Epidemiology of Prostate Cancer Risk and ProgressionR01CA088164 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VAN DEN EEDEN, STEPHEN K., WITTE, JOHN S. · 2000 to 2015
$6.1M
Genomewide Association Study of Prostate CancerU01CA127298 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTE, JOHN S. · 2008 to 2012
$5.1M
Genome-wide Pleiotropy Scan across Multiple CancersR01CA201358 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRAFF, REBECCA ELIZABETH, SAKODA, LORI · 2016 to 2019
$2.5M
The inverse association between cancer and Alzheimers disease: comparing spurious and causal explanations to illuminate the causes of Alzheimers diseaseRF1AG059872 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GLYMOUR, MEDELLENA MARIA · 2018 to 2021
$1.9M
Genetics of mammographic density and breast cancer risk in LatinasK24CA169004 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZIV, ELAD · 2012 to 2021
$1.8M
Training in the Molecular & Genetic Epidemiology of CancerT32CA112355 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, IONA C, ZIV, ELAD · 2020 to 2024
$1.8M
Evaluating a Risk Prediction Model for Lung CancerK07CA188142 · NCI · KAISER FOUNDATION RESEARCH INSTITUTE · PI SAKODA, LORI · 2015 to 2019
$920k
NCI NIH HHS K07 CA188142NCI NIH HHS K24 CA169004NCI NIH HHS R01 CA088164NCI NIH HHS R01 CA201358NCI NIH HHS R25 CA112355NCI NIH HHS T32 CA112355NCI NIH HHS U01 CA127298NIA NIH HHS RC2 AG036607NIA NIH HHS RF1 AG059872NIGMS NIH HHS T32 GM067547
6 · The paper itself

Abstract

Even distinct cancer types share biological hallmarks. Here, we investigate polygenic risk score (PRS)-specific pleiotropy across 16 cancers in European ancestry individuals from the Genetic Epidemiology Research on Adult Health and Aging cohort (16,012 cases, 50,552 controls) and UK Biobank (48,969 cases, 359,802 controls). Within cohorts, each PRS is evaluated in multivariable logistic regression models against all other cancer types. Results are then meta-analyzed across cohorts. Ten positive and one inverse cross-cancer associations are found after multiple testing correction. Two pairs show bidirectional associations; the melanoma PRS is positively associated with oral cavity/pharyngeal cancer and vice versa, whereas the lung cancer PRS is positively associated with oral cavity/pharyngeal cancer, and the oral cavity/pharyngeal cancer PRS is inversely associated with lung cancer. Overall, we validate known, and uncover previously unreported, patterns of pleiotropy that have the potential to inform investigations of risk prediction, shared etiology, and precision cancer prevention strategies.

Indexed as

Molecular EpidemiologyAdultAgedBiomarkers, TumorFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansLogistic ModelsLung NeoplasmsMaleMiddle AgedRisk FactorsBiomarkers, Tumor

Identifiers

PMID33579919
PMCPMC7880989
OpenAlexW3128061434

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.