Evidence map›Paper›PMID 33579790›Full record

ArticleGut2022

Oncogenetic landscape of lymphomagenesis in coeliac disease.

Sascha Cording, Ludovic Lhermitte, Georgia Malamut, Sofia Berrabah, Amélie Trinquand, Nicolas Guegan, Patrick Villarese, Sophie Kaltenbach, Bertrand Meresse, Sherine Khater and 14 more

Open access · hybridAbstract read
In one paragraph

Article in Gut, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 91 citations in OpenAlex.

  1. Guideline
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. The Significance of the Microenvironment in T/Nk-Cell Neoplasms.International journal of molecular sciences · 2025
    Review
  9. Review
  10. Review
  11. Review
  12. Coeliac disease: complications and comorbidities.Nature reviews. Gastroenterology & hepatology · 2025
    Review
  13. Article
  14. Activated CD27Gastro hep advances · 2025
    Article
  15. Article
  16. Review
  17. Article
  18. Refractory Celiac Disease: What the Gastroenterologist Should Know.International journal of molecular sciences · 2024
    Review
  19. Evolution in coeliac disease diagnosis and management.JGH open : an open access journal of gastroenterology and hepatology · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 2 countries.

Sascha CordingUniversité de Paris, Imagine Institute, Laboratory of Intestinal Immunity, INSERM UMR 1163, Paris, France.
Ludovic Lhermitte *Université de Paris, Institut Necker-Enfants Malades, INSERM UMR 1151, Paris, France.
Georgia Malamut *Université de Paris, Imagine Institute, Laboratory of Intestinal Immunity, INSERM UMR 1163, Paris, France.ORCID 0000-0003-4030-3025
Sofia Berrabah *Université de Paris, Imagine Institute, Laboratory of Intestinal Immunity, INSERM UMR 1163, Paris, France.
Amélie TrinquandUniversité de Paris, Imagine Institute, Laboratory of Intestinal Immunity, INSERM UMR 1163, Paris, France.
Nicolas GueganUniversité de Paris, Imagine Institute, Laboratory of Intestinal Immunity, INSERM UMR 1163, Paris, France.
Patrick VillareseUniversité de Paris, Institut Necker-Enfants Malades, INSERM UMR 1151, Paris, France.
Sophie KaltenbachDepartment of Cytogenetics, AP-HP, Hôpital Necker Enfants-Malades, Paris, France.
Bertrand MeresseUniversité de Lille, CHU Lille, INSERM UMR 1286 - INFINITE - Institute for Translational Research in Inflammation, Lille, France.
Sherine KhaterDepartment of Gastroenterology, AP-HP, Hôpital Européen Georges Pompidou, Paris, France.
Michael DussiotUniversité de Paris, Imagine Institute, Laboratory of Molecular Mechanisms of Hematological Disorders and Therapeutic Implications, INSERM UMR 1163, Paris, France.
Marc BrasUniversité de Paris, Imagine Institute, Bioinformatics Platform, Paris, France.
Morgane CheminantUniversité de Paris, Imagine Institute, Laboratory of Molecular Mechanisms of Hematological Disorders and Therapeutic Implications, INSERM UMR 1163, Paris, France.
Bruno TessonInstitut Carnot CALYM, Paris, France.
Christine Bole-FeysotUniversité de Paris, Imagine Institute, Genomics Platform, Paris, France.
Julie BruneauDepartment of Pathology, AP-HP, Hôpital Necker Enfants-Malades, Paris, France.
Thierry Jo MolinaUniversité de Paris, Imagine Institute, Laboratory of Molecular Mechanisms of Hematological Disorders and Therapeutic Implications, INSERM UMR 1163, Paris, France.
David SibonClinical Haematology, AP-HP, Hôpital Necker Enfants-Malades, Paris, France.
Elizabeth MacintyreUniversité de Paris, Institut Necker-Enfants Malades, INSERM UMR 1151, Paris, France.
Olivier HermineUniversité de Paris, Imagine Institute, Laboratory of Molecular Mechanisms of Hematological Disorders and Therapeutic Implications, INSERM UMR 1163, Paris, France.
Christophe CellierDepartment of Gastroenterology, AP-HP, Hôpital Européen Georges Pompidou, Paris, France.
Vahid AsnafiUniversité de Paris, Institut Necker-Enfants Malades, INSERM UMR 1151, Paris, France.
Nadine Cerf-BensussanUniversité de Paris, Imagine Institute, Laboratory of Intestinal Immunity, INSERM UMR 1163, Paris, France nadine.cerf-bensussan@inserm.fr.ORCID 0000-0003-0665-1245
CELAC network
Hôpital Necker-Enfants Malades · FRInserm · FRAssistance Publique – Hôpitaux de Paris · FRUniversité Paris Cité · FRInstitut Carnot ARTS · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveEnteropathy-associated T-cell lymphoma (EATL) is a rare but severe complication of coeliac disease (CeD), often preceded by low-grade clonal intraepithelial lymphoproliferation, referred to as type II refractory CeD (RCDII). Knowledge on underlying oncogenic mechanisms remains scarce. Here, we analysed and compared the mutational landscape of RCDII and EATL in order to identify genetic drivers of CeD-associated lymphomagenesis.

designPure populations of RCDII-cells derived from intestinal biopsies (n=9) or sorted from blood (n=2) were analysed by whole exome sequencing, comparative genomic hybridisation and RNA sequencing. Biopsies from RCDII (n=50), EATL (n=19), type I refractory CeD (n=7) and uncomplicated CeD (n=18) were analysed by targeted next-generation sequencing. Moreover, functional in vitro studies and drug testing were performed in RCDII-derived cell lines.

results80% of RCDII and 90% of EATL displayed somatic gain-of-functions mutations in the JAK1-STAT3 pathway, including a remarkable p.G1097 hotspot mutation in the JAK1 kinase domain in approximately 50% of cases. Other recurrent somatic events were deleterious mutations in nuclear factor kappa-light-chain-enhancer of activated B-cells (NF-κB) regulators TNFAIP3 and TNIP3 and potentially oncogenic mutations in TET2, KMT2D and DDX3X. JAK1 inhibitors, and the proteasome inhibitor bortezomib could block survival and proliferation of malignant RCDII-cell lines.

conclusionMutations activating the JAK1-STAT3 pathway appear to be the main drivers of CeD-associated lymphomagenesis. In concert with mutations in negative regulators of NF-κB, they may favour the clonal emergence of malignant lymphocytes in the cytokine-rich coeliac intestine. The identified mutations are attractive therapeutic targets to treat RCDII and block progression towards EATL.

Indexed as

AdultAgedAged, 80 and overCeliac DiseaseCohort StudiesEnteropathy-Associated T-Cell LymphomaFemaleFranceGain of Function MutationHumansJanus Kinase 1LymphocytesMaleMiddle AgedSTAT3 Transcription FactorYoung AdultJAK1 protein, humanJanus Kinase 1STAT3 protein, humanSTAT3 Transcription FactorCOELIAC DISEASEGASTROINTESTINAL LYMPHOMAGENE MUTATION

Identifiers

PMID33579790
PMCPMC8862029
OpenAlexW3128307790

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.