Evidence map›Paper›PMID 33576335›Full record

ArticleeLife2021

Basis of specificity for a conserved and promiscuous chromatin remodeling protein.

Drake A Donovan, Johnathan G Crandall, Vi N Truong, Abigail L Vaaler, Thomas B Bailey, Devin Dinwiddie, Orion Gb Banks, Laura E McKnight, Jeffrey N McKnight

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Drake A DonovanInstitute of Molecular Biology, University of Oregon, Eugene, United States.
Johnathan G CrandallInstitute of Molecular Biology, University of Oregon, Eugene, United States.ORCID 0000-0002-9144-3135
Vi N TruongInstitute of Molecular Biology, University of Oregon, Eugene, United States.
Abigail L VaalerInstitute of Molecular Biology, University of Oregon, Eugene, United States.
Thomas B BaileyInstitute of Molecular Biology, University of Oregon, Eugene, United States.
Devin DinwiddieInstitute of Molecular Biology, University of Oregon, Eugene, United States.
Orion Gb BanksInstitute of Molecular Biology, University of Oregon, Eugene, United States.
Laura E McKnightInstitute of Molecular Biology, University of Oregon, Eugene, United States.ORCID 0000-0002-4322-3066
Jeffrey N McKnightInstitute of Molecular Biology, University of Oregon, Eugene, United States.
University of Oregon · US

Funding

MOLECULAR BIOLOGY AND BIOPHYSICST32GM007759 · NIGMS · UNIVERSITY OF OREGON · PI NOLEN, BRADLEY J · 1985 to 2021
$8.5M
Graduate Training in Genetics Administrative Supplement - Career Curriculum DevelopmentT32GM007413 · NIGMS · UNIVERSITY OF OREGON · PI GUILLEMIN, KAREN J · 1985 to 2022
$7.8M
Mechanisms and Consequences of Specific Chromatin Arrangements in vivoR01GM129242 · NIGMS · UNIVERSITY OF OREGON · PI MCKNIGHT, LAURA EMILY · 2018 to 2022
$1.5M
NIGMS NIH HHS R01 GM129242NIGMS NIH HHS T32 GM007413NIGMS NIH HHS T32 GM007759
6 · The paper itself

Abstract

Eukaryotic genomes are organized dynamically through the repositioning of nucleosomes. Isw2 is an enzyme that has been previously defined as a genome-wide, nonspecific nucleosome spacing factor. Here, we show that Isw2 instead acts as an obligately targeted nucleosome remodeler in vivo through physical interactions with sequence-specific factors. We demonstrate that Isw2-recruiting factors use small and previously uncharacterized epitopes, which direct Isw2 activity through highly conserved acidic residues in the Isw2 accessory protein Itc1. This interaction orients Isw2 on target nucleosomes, allowing for precise nucleosome positioning at targeted loci. Finally, we show that these critical acidic residues have been lost in the

Indexed as

Adenosine TriphosphatasesAnimalsChromatin Assembly and DisassemblyDrosophilaNuclear ProteinsNucleosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsAdenosine TriphosphatasesISWI proteinNuclear ProteinsNucleosomesSaccharomyces cerevisiae ProteinsTranscription FactorsYGL133W protein, S cerevisiaebiochemistrychemical biologychromatin arrayschromatin remodelingchromosomesgene expressionIsw2nucleosomeS. cerevisiae

Identifiers

PMID33576335
PMCPMC7968928
OpenAlexW3127771724

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.