Evidence map›Paper›PMID 33573704›Full record

Trial reportClinical epigenetics2021

Circulating cell-free nucleosomes as biomarker for kidney transplant rejection: a pilot study.

Jeroen G H P Verhoeven, Carla C Baan, Annemiek M A Peeters, Marian C Clahsen-van Groningen, Daan Nieboer, Mariëlle Herzog, Marc Eccleston, Dennis A Hesselink, Karin Boer

Open access · goldAbstract readComparative StudyRandomized Controlled Trial
In one paragraph

Trial report in Clinical epigenetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jeroen G H P VerhoevenDepartment of Internal Medicine, Division of Nephrology and Transplantation, Erasmus MC, University Medical Center Rotterdam, Room Na-524, P.O. Box 2040, 3000 CA, Rotterdam, The Netherlands. j.verhoeven@erasmusmc.nl.ORCID 0000-0002-5860-3782
Carla C BaanDepartment of Internal Medicine, Division of Nephrology and Transplantation, Erasmus MC, University Medical Center Rotterdam, Room Na-524, P.O. Box 2040, 3000 CA, Rotterdam, The Netherlands.
Annemiek M A PeetersDepartment of Internal Medicine, Division of Nephrology and Transplantation, Erasmus MC, University Medical Center Rotterdam, Room Na-524, P.O. Box 2040, 3000 CA, Rotterdam, The Netherlands.
Marian C Clahsen-van GroningenDepartment of Pathology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.
Daan NieboerDepartment of Public Health, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.
Mariëlle HerzogBelgian Volition SPRL, Isnes, Belgium.
Marc EcclestonBelgian Volition SPRL, Isnes, Belgium.
Dennis A HesselinkDepartment of Internal Medicine, Division of Nephrology and Transplantation, Erasmus MC, University Medical Center Rotterdam, Room Na-524, P.O. Box 2040, 3000 CA, Rotterdam, The Netherlands.
Karin BoerDepartment of Internal Medicine, Division of Nephrology and Transplantation, Erasmus MC, University Medical Center Rotterdam, Room Na-524, P.O. Box 2040, 3000 CA, Rotterdam, The Netherlands.
Erasmus MC · NLVolition (Belgium) · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThere is an unmet need for noninvasive markers specific for kidney transplant rejection. Such a marker may eventually overcome the need for a transplant biopsy. In this pilot study, the potential of circulating cell-free nucleosomes (CCFN) to serve as a biomarker for kidney transplant rejection was evaluated.

methodsForty de novo kidney transplant recipients were prospectively followed as part of a randomized, controlled clinical trial. Total CCFN (H3) and CCFN with the histone modifications H3K36me3 and H3 citrulline were measured in patients at four fixed time points: before transplantation and on days 3-6, 30 and 180 after kidney transplantation. In addition, serum collected at times of transplant rejection (n = 14) was analyzed. CCFN were measured with a Nu.Q™ Assay kit (VolitionRx), an ELISA-based assay using antibodies directed against nucleosomes.

resultsFor total CCFN (H3), H3K36me3, and H3 citrulline, the same pattern was seen over time: Concentrations were elevated shortly after transplantation (day 3-6) followed by a decline reaching baseline (pre-transplantation) values at days 30 and 180. At times of acute rejection, the median concentration of total CCFN (H3) was significantly higher compared to the stable situation (day 30): 4309 (3435-5285) versus 2885 (1668-3923) ng/mL, p < 0.05, respectively. Total CCFN (H3) had an acceptable ability to discriminate rejection from no rejection (AUC-ROC = 0.73) with a negative predictive value of 92.9%. For both histone modifications (H3K36me3 and H3 citrulline), there was no significant difference between episodes of acute rejection and the stable situation (day 30).

conclusionIn this pilot study, total CCFN (H3) concentrations are increased at times of acute kidney transplant rejection. The high negative predictive value implies that whenever a patient experiences loss of renal transplant function and the total CCFN (H3) is not increased, causes other than acute rejection should be considered. Clinical implementation of total CCFN (H3) measurement may avoid unnecessary and potentially harmful kidney transplant biopsies.

Indexed as

AdultAgedAntibodiesBiomarkersBiopsyDNA MethylationEpigenesis, GeneticFemaleGraft RejectionHistone CodeHumansKidney DiseasesKidney TransplantationMaleMiddle AgedNucleosomesAntibodiesBiomarkersNucleosomesBiomarkerCirculating cell-free nucleosomesHumanKidneyRejectionTransplantation

Identifiers

PMID33573704
PMCPMC7879674
OpenAlexW3129161524

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.