Evidence map›Paper›PMID 33572424›Full record

ArticleInternational journal of molecular sciences2021

Label-Free Quantitative Phosphoproteomics of the Fission Yeast

Barbara Sivakova, Jan Jurcik, Veronika Lukacova, Tomas Selicky, Ingrid Cipakova, Peter Barath, Lubos Cipak

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Protein Kinases: Function, Substrates, and Implication in Diseases.International journal of molecular sciences · 2022
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Barbara SivakovaInstitute of Chemistry, Slovak Academy of Sciences, Dubravska cesta 9, 845 38 Bratislava, Slovakia.
Jan JurcikBiomedical Research Center, Cancer Research Institute, Slovak Academy of Sciences, Dubravska cesta 9, 845 05 Bratislava, Slovakia.ORCID 0000-0002-1853-2959
Veronika LukacovaMedirex Group Academy, n.o., Jana Bottu 2, 917 01 Trnava, Slovakia.
Tomas SelickyBiomedical Research Center, Cancer Research Institute, Slovak Academy of Sciences, Dubravska cesta 9, 845 05 Bratislava, Slovakia.
Ingrid CipakovaBiomedical Research Center, Cancer Research Institute, Slovak Academy of Sciences, Dubravska cesta 9, 845 05 Bratislava, Slovakia.
Peter BarathInstitute of Chemistry, Slovak Academy of Sciences, Dubravska cesta 9, 845 38 Bratislava, Slovakia.ORCID 0000-0001-7330-955X
Lubos CipakBiomedical Research Center, Cancer Research Institute, Slovak Academy of Sciences, Dubravska cesta 9, 845 05 Bratislava, Slovakia.ORCID 0000-0001-7897-6001
Slovak Academy of Sciences · SKInstitute of Chemistry of the Slovak Academy of Sciences · SKMedirex Group Academy · SK

Funding

Agentúra na Podporu Výskumu a Vývoja APVV-16-0120Slovenská Akadémia Vied APP0007Vedecká Grantová Agentúra MŠVVaŠ SR a SAV 2/0026/18Vedecká Grantová Agentúra MŠVVaŠ SR a SAV 2/0039/19
6 · The paper itself

Abstract

The phosphorylation of proteins modulates various functions of proteins and plays an important role in the regulation of cell signaling. In recent years, label-free quantitative (LFQ) phosphoproteomics has become a powerful tool to analyze the phosphorylation of proteins within complex samples. Despite the great progress, the studies of protein phosphorylation are still limited in throughput, robustness, and reproducibility, hampering analyses that involve multiple perturbations, such as those needed to follow the dynamics of phosphoproteomes. To address these challenges, we introduce here the LFQ phosphoproteomics workflow that is based on Fe-IMAC phosphopeptide enrichment followed by strong anion exchange (SAX) and porous graphitic carbon (PGC) fractionation strategies. We applied this workflow to analyze the whole-cell phosphoproteome of the fission yeast

Indexed as

Anion Exchange ResinsCarbonChemical FractionationChromatography, Ion ExchangeGraphitePhosphoproteinsPorosityProteomicsReproducibility of ResultsSchizosaccharomycesSchizosaccharomyces pombe ProteinsAnion Exchange ResinsCarbonGraphitePhosphoproteinsSchizosaccharomyces pombe ProteinsLFQ phosphoproteomicsPGCSAXSchizosaccharomyces pombe

Identifiers

PMID33572424
PMCPMC7916215
OpenAlexW3126180712

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.