Evidence map›Paper›PMID 33572408›Full record

ArticleCells2021

Comparative Mapping of the Macrochromosomes of Eight Avian Species Provides Further Insight into Their Phylogenetic Relationships and Avian Karyotype Evolution.

Lucas G Kiazim, Rebecca E O'Connor, Denis M Larkin, Michael N Romanov, Valery G Narushin, Evgeni A Brazhnik, Darren K Griffin

Abstract readComparative Study
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Bridging methodological gaps in avian cytogenetics: comprehensive and optimized protocols for chromosomal preparation in birds.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Microchromosomes are building blocks of bird, reptile, and mammal chromosomes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Anchoring the CerEla1.0 Genome Assembly to Red Deer (Animals : an open access journal from MDPI · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lucas G KiazimSchool of Biosciences, University of Kent, Canterbury CT2 7NJ, UK.
Rebecca E O'ConnorSchool of Biosciences, University of Kent, Canterbury CT2 7NJ, UK.ORCID 0000-0002-4270-970X
Denis M LarkinDepartment of Comparative Biomedical Sciences, Royal Veterinary College, University of London, London NW1 0T, UK.
Michael N RomanovSchool of Biosciences, University of Kent, Canterbury CT2 7NJ, UK.ORCID 0000-0003-3584-4644
Valery G NarushinResearch Institute for Environment Treatment, 69032 Zaporozhye, Ukraine.ORCID 0000-0001-6799-6605
Evgeni A BrazhnikBIOTROF+ Ltd., Pushkin, 196602 St Petersburg, Russia.ORCID 0000-0003-2178-9330
Darren K GriffinSchool of Biosciences, University of Kent, Canterbury CT2 7NJ, UK.ORCID 0000-0001-7595-3226

Funding

Biotechnology and Biological Sciences Research Council BB/E010652/1Biotechnology and Biological Sciences Research Council BB/K008226/1Biotechnology and Biological Sciences Research Council BB/P020054/1
6 · The paper itself

Abstract

Avian genomes typically consist of ~10 pairs of macro- and ~30 pairs of microchromosomes. While inter-chromosomally, a pattern emerges of very little change (with notable exceptions) throughout evolution, intrachromosomal changes remain relatively poorly studied. To rectify this, here we use a pan-avian universally hybridising set of 74 chicken bacterial artificial chromosome (BAC) probes on the macrochromosomes of eight bird species: common blackbird, Atlantic canary, Eurasian woodcock, helmeted guinea fowl, houbara bustard, mallard duck, and rock dove. A combination of molecular cytogenetic, bioinformatics, and mathematical analyses allowed the building of comparative cytogenetic maps, reconstruction of a putative Neognathae ancestor, and assessment of chromosome rearrangement patterns and phylogenetic relationships in the studied neognath lineages. We observe that, as with our previous studies, chicken appears to have the karyotype most similar to the ancestor; however, previous reports of an increased rate of intrachromosomal change in Passeriformes (songbirds) appear not to be the case in our dataset. The use of this universally hybridizing probe set is applicable not only for the re-tracing of avian karyotype evolution but, potentially, for reconstructing genome assemblies.

Indexed as

Chromosome MappingEvolution, MolecularKaryotypePhylogenyAnimalsBirdsChickensChromosomesChromosomes, Artificial, BacterialGene OrderGene RearrangementLikelihood FunctionsPrincipal Component AnalysisSpecies Specificityavian speciesBACschromosome rearrangementscomparative cytogenetic mapsmacrochromosomephylogenomics

Identifiers

PMID33572408
PMCPMC7916199

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.