Evidence map›Paper›PMID 33571527›Full record

ArticleThe Journal of biological chemistry

Development of a colorimetric α-ketoglutarate detection assay for prolyl hydroxylase domain (PHD) proteins.

Samantha J Wong, Alison E Ringel, William Yuan, Joao A Paulo, Haejin Yoon, Mark A Currie, Marcia C Haigis

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

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  11. Spectroscopic and in vitro Investigations of FeChembiochem : a European journal of chemical biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Samantha J WongDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, USA.
Alison E RingelDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, USA.
William YuanDepartment of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, USA.
Joao A PauloDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, USA.
Haejin YoonDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, USA.
Mark A CurrieDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, USA; Department of Biology, University of Toronto Mississauga, Mississauga, Ontario, Canada; Department of Cell and Systems Biology, University of Toronto, Toronto, Ontario, Canada.
Marcia C HaigisDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts, USA. Electronic address: marcia_haigis@hms.harvard.edu.
Harvard University · US

Funding

RESEARCH TRAINING IN PEDIATRIC EMERGENCY MEDICINET32HD040128 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI Kenneth D. Mandl · 2001 to 2026
$5.0M
Molecular mechanisms of Nutrient sensing in cancerR01CA213062 · NCI · HARVARD MEDICAL SCHOOL · PI HAIGIS, MARCIA · 2017 to 2021
$1.9M
Advancing Multiplexed Isobaric Tag-based Strategies for Proteome ProfilingR01GM132129 · NIGMS · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2019 to 2023
$1.7M
NCI NIH HHS R01 CA213062NICHD NIH HHS T32 HD040128NIGMS NIH HHS R01 GM132129
6 · The paper itself

Abstract

Since the discovery of the prolyl hydroxylases domain (PHD) proteins and their canonical hypoxia-inducible factor (HIF) substrate two decades ago, a number of in vitro hydroxylation (IVH) assays for PHD activity have been developed to measure the PHD-HIF interaction. However, most of these assays either require complex proteomics mass spectrometry methods that rely on the specific PHD-HIF interaction or require the handling of radioactive material, as seen in the most commonly used assay measuring [

Indexed as

ColorimetryEnzyme AssaysHumansHydroxylationHypoxia-Inducible Factor 1, alpha SubunitHypoxia-Inducible Factor-Proline DioxygenasesKetoglutaric AcidsKineticsPhenylhydrazinesSubstrate Specificity2,4-dinitrophenylhydrazineEGLN3 protein, humanHIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitHypoxia-Inducible Factor-Proline DioxygenasesKetoglutaric AcidsPhenylhydrazines2,4-dinitrophenylhydrazineenzyme kineticshigh-throughput assayin vitro hydroxylationprolyl hydroxylaseα-ketoglutarate-dependent dioxygenases

Identifiers

PMID33571527
PMCPMC7961094
OpenAlexW3128664591

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.