Evidence map›Paper›PMID 33570164›Full record

ReviewEuropean journal of immunology2021

Resolving trained immunity with systems biology.

Valerie A C M Koeken, Reinout van Crevel, Mihai G Netea, Yang Li

Open access · hybridAbstract readReview
In one paragraph

Review in European journal of immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  6. Article
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  8. Review
  9. Adaptive Immune Response toFrontiers in cellular and infection microbiology · 2022
    Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Valerie A C M KoekenRadboud Center for Infectious Diseases and Department of Internal Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID 0000-0002-5783-9013
Reinout van CrevelRadboud Center for Infectious Diseases and Department of Internal Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.
Mihai G NeteaRadboud Center for Infectious Diseases and Department of Internal Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.
Yang LiRadboud Center for Infectious Diseases and Department of Internal Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.
Radboud University Nijmegen · NLUniversity of Bonn · DE

Funding

ULTIMATER01AI145781 · NIAID · STICHTING RADBOUD UNIVERSITEIT · PI THWAITES, GUY, VAN CREVEL, REINOUT · 2019 to 2023
$4.4M
NIAID NIH HHS R01 AI145781
6 · The paper itself

Abstract

Trained immunity is characterized by long-term functional reprogramming of innate immune cells following challenge with pathogens or microbial ligands during infection or vaccination. This cellular reprogramming leads to increased responsiveness upon restimulation, and is mediated through epigenetic and metabolic modifications. In this review, we describe how molecular mechanisms underlying trained immunity, for example, induced by β-glucan or Bacille Calmette-Guérin (BCG) vaccination, can be investigated by using and integrating different layers of information including genome, epigenome, transcriptome, proteome, metabolome, microbiome, immune cell phenotyping, and function. We also describe the most commonly used experimental and computational techniques. Finally, we provide a number of examples of how a systems biology approach was applied to study trained immunity to understand interindividual variation or the complex interplay between molecular layers. In conclusion, trained immunity represents an opportunity for regulating innate immune function, and understanding the complex interplay of mechanisms that mediate trained immunity might enable us to employ it as a clinical tool in the future.

Indexed as

Adaptive ImmunityCellular ReprogrammingEpigenesis, GeneticHumansImmunity, InnateMetabolomeProteomeSystems BiologyTranscriptomeVaccinesProteomeVaccinesdata integrationinnate immunitymultiomicssystems biologytrained immunity

Identifiers

PMID33570164
PMCPMC11298780
OpenAlexW3128458534

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.