Evidence map›Paper›PMID 33569691›Full record

ArticleArchives of toxicology2021

New approach for the rational selection of markers to identify botulinum toxins.

Osnat Rosen, Liron Feldberg, Eyal Dor, Ran Zichel

Abstract readValidation Study
PubMed Publisher
In one paragraph

Article in Archives of toxicology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Botulism in fish: a review.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
    Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Osnat Rosen *Department of Biotechnology, Israel Institute for Biological Research, 7410001, Ness Ziona, Israel.ORCID http://orcid.org/0000-0001-7604-1755
Liron Feldberg *Department of Analytical Chemistry, Israel Institute for Biological Research, 7410001, Ness Ziona, Israel. lironf@iibr.gov.ORCID http://orcid.org/0000-0003-3612-1421
Eyal DorDepartment of Biotechnology, Israel Institute for Biological Research, 7410001, Ness Ziona, Israel.
Ran ZichelDepartment of Biotechnology, Israel Institute for Biological Research, 7410001, Ness Ziona, Israel. ranz@iibr.gov.il.ORCID http://orcid.org/0000-0002-3249-4901
Israel Institute for Biological Research · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The application of mass spectrometry (MS) to detect unique peptide markers has been widely employed as a means of identifying bacterial proteins. Botulinum neurotoxins (BoNTs) are bacterial proteins that cause the life-threatening disease botulism. BoNTs are divided into several antigenically distinct serotypes and several dozen subtypes. The toxins' molecular heterogeneity makes their detection highly challenging. In this study, we describe a new LC-MS/MS-based platform for the direct identification of proteins derived from various species and subspecies in a single assay, as exemplified by BoNTs. The platform employs a rational down-selection process through several steps based on a combination of bioinformatics, tryptic digestion, and LC-MS, each leads to the final panel of markers. This approach has been demonstrated for all 8 subtypes of botulinum serotype A (BoNT/A). Ab-independent and Ab-dependent assays were developed based on the identification of 4 rationally selected markers or a combination of some of them, which enables full selectivity coverage. The Ab-independent assay, which is highly simple and rapid, has a sample-to-result turnaround time of approximately 40 min and enables the identification of 500 MsLD

Indexed as

Amino Acid SequenceAnimalsBotulinum Toxins, Type AChromatography, LiquidClostridiumMicePeptidesTandem Mass SpectrometryBotulinum Toxins, Type APeptidesBotulinumIdentificationIn vitro assayLC–MS/MSMarkersTryptic digest

Identifiers

PMID33569691
OpenAlexW3126222017

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.