Evidence map›Paper›PMID 33568731›Full record

ArticleScientific reports2021

High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility.

Daniel J Goetschius, Samantha R Hartmann, Suriyasri Subramanian, Carol M Bator, Neil D Christensen, Susan L Hafenstein

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  5. bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. All-atom MD simulations of the HPV16 capsid.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. EngineeringVaccines · 2024
    Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Daniel J Goetschius *Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, 16802, USA.
Samantha R Hartmann *Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, 16802, USA.
Suriyasri SubramanianDepartment of Medicine, Penn State University College of Medicine, Hershey, PA, 17033, USA.
Carol M BatorDepartment of Biochemistry and Molecular Biology, Penn State University, University Park, PA, 16802, USA.
Neil D ChristensenDepartment of Pathology, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Susan L HafensteinDepartment of Biochemistry and Molecular Biology, Penn State University, University Park, PA, 16802, USA. shafenstein@psu.edu.
Pennsylvania State University · US

Funding

Structural Studies of Human PapillomavirusR01AI134910 · NIAID · UNIVERSITY OF MINNESOTA · PI HAFENSTEIN, SUSAN · 2020 to 2024
$3.5M
NIAID NIH HHS R01 AI134910
6 · The paper itself

Abstract

Human papillomavirus (HPV) is a significant health burden and leading cause of virus-induced cancers. HPV is epitheliotropic and its replication is tightly associated with terminal keratinocyte differentiation making production and purification of high titer virus preparations for research problematic, therefore alternative HPV production methods have been developed for virological and structural studies. In this study we use HPV16 quasivirus, composed of HPV16 L1/L2 capsid proteins with a packaged cottontail rabbit papillomavirus genome. We have achieved the first high resolution, 3.1 Å, structure of HPV16 by using a local subvolume refinement approach. The high resolution enabled us to build L1 unambiguously and identify L2 protein strands. The L2 density is incorporated adjacent to conserved L1 residues on the interior of the capsid. Further interpretation with our own software for Icosahedral Subvolume Extraction and Correlated Classification revealed flexibility, on the whole-particle level through diameter analysis and local movement with inter-capsomer analysis. Inter-capsomer expansion or contraction, governed by the connecting arms, showed no bias in the magnitude or direction of capsomer movement. We propose that papillomavirus capsids are dynamic and capsomers move as rigid bodies connected by flexible linkers. The resulting virus structure will provide a framework for continuing biochemical, genetic and biophysical research for papillomaviruses. Furthermore, our approach has allowed insight into the resolution barrier that has previously been a limitation in papillomavirus structural studies.

Indexed as

CapsidCapsid ProteinsEpitopesHuman papillomavirus 16HumansModels, MolecularOncogene Proteins, ViralPapillomaviridaeProtein BindingVirionCapsid ProteinsEpitopesL2 protein, Human papillomavirus type 16Oncogene Proteins, Viral

Identifiers

PMID33568731
PMCPMC7876116
OpenAlexW3127693404

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.