Evidence map›Paper›PMID 33568529›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Local translation in nuclear condensate amyloid bodies.

Phaedra R Theodoridis, Michael Bokros, Dane Marijan, Nathan C Balukoff, Dazhi Wang, Chloe C Kirk, Taylor D Budine, Harris D Goldsmith, Miling Wang, Timothy E Audas and 1 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

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  13. Major histocompatibility class I antigenic peptides derived from translation of pre-mRNAs generate immune tolerance.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Review
  15. ArcRNAs and the formation of nuclear bodies.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
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  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Phaedra R TheodoridisDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136.
Michael BokrosDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136.
Dane MarijanDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6.
Nathan C BalukoffDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136.ORCID 0000-0002-0090-9842
Dazhi WangDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136.ORCID 0000-0001-9889-8290
Chloe C KirkDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136.ORCID 0000-0002-2254-1380
Taylor D BudineDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136.
Harris D GoldsmithDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136.
Miling WangDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136.
Timothy E AudasDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6.
Stephen LeeDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136; stephenlee@med.miami.edu.
University of Miami · USSimon Fraser University · CA

Funding

Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI George S. Grills · 2019 to 2026
$24.1M
The Nucleolar Detention Center: a Hub of Long Noncoding RNAs that Imprison Proteins During StressR01GM115342 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LEE, STEPHEN · 2015 to 2022
$2.6M
Induction of Tumor Cell Dormancy by Ribosomal Intergenic Spacer Noncoding RNAR01CA200676 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LEE, STEPHEN · 2016 to 2020
$1.7M
Amyloid-bodies and the Evolution of MalignanciesR01CA275828 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephen Lee · 2023 to 2026
$1.6M
Cancer Epigenetics Training ProgramT32CA217835 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FIGUEROA, MARIA EUGENIA, MOREY, LLUIS · 2018 to 2022
$1.3M
Adaptation to Extracellular Acidosis by pH-Sensing eIF5AF30CA243268 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BALUKOFF, NATHAN CHARLES · 2019 to 2021
$149k
CIHR PJT‐162364NCI NIH HHS F30 CA243268NCI NIH HHS P30 CA240139NCI NIH HHS R01 CA200676NCI NIH HHS R01 CA275828NCI NIH HHS T32 CA217835NIGMS NIH HHS R01 GM115342
6 · The paper itself

Abstract

Biomolecular condensates concentrate molecules to facilitate basic biochemical processes, including transcription and DNA replication. While liquid-like condensates have been ascribed various functions, solid-like condensates are generally thought of as amorphous sites of protein storage. Here, we show that solid-like amyloid bodies coordinate local nuclear protein synthesis (LNPS) during stress. On stimulus, translationally active ribosomes accumulate along fiber-like assemblies that characterize amyloid bodies. Mass spectrometry analysis identified regulatory ribosomal proteins and translation factors that relocalize from the cytoplasm to amyloid bodies to sustain LNPS. These amyloidogenic compartments are enriched in newly transcribed messenger RNA by Heat Shock Factor 1 (HSF1). Depletion of stress-induced ribosomal intergenic spacer noncoding RNA (rIGSRNA) that constructs amyloid bodies prevents recruitment of the nuclear protein synthesis machinery, abolishes LNPS, and impairs the nuclear HSF1 response. We propose that amyloid bodies support local nuclear translation during stress and that solid-like condensates can facilitate complex biochemical reactions as their liquid counterparts can.

Indexed as

Heat-Shock ResponseAmyloidCell HypoxiaCell NucleusCytoplasmHeat Shock Transcription FactorsHumansMCF-7 CellsProtein BiosynthesisRibosomesRNA, Long NoncodingAmyloidHeat Shock Transcription FactorsHSF1 protein, humanRNA, Long NoncodingacidosisHsp70HSRhypoxialong noncoding RNA

Identifiers

PMID33568529
PMCPMC7896321
OpenAlexW3128875287

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.