Evidence map›Paper›PMID 33568518›Full record

ArticleScience translational medicine2021

Engineering adeno-associated viral vectors to evade innate immune and inflammatory responses.

Ying Kai Chan, Sean K Wang, Colin J Chu, David A Copland, Alexander J Letizia, Helena Costa Verdera, Jessica J Chiang, Meher Sethi, May K Wang, William J Neidermyer and 31 more

Open access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 150 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
150citing papers in PubMed, 1 pooled it
24.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

150 citing papers in PubMed, 1 synthesis or guideline pooled it, 196 citations in OpenAlex.

  1. Pooled it
  2. Trial
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  8. Article
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  11. AAV NRF2 gene therapy preserves retinal structure and function in rodent models of oxidative damage.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Article
  12. Review
  13. Article
  14. RNA-Based Therapies for Treating Monogenic Cardiomyopathies.The Canadian journal of cardiology · 2026
    Review
  15. Article
  16. Review
  17. Article
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  20. Article

90 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 10 institutions in 3 countries.

Ying Kai ChanWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA. gchurch@genetics.med.harvard.edu yingkai_chan@hms.harvard.edu.ORCID 0000-0001-6483-8337
Sean K WangDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-1557-8510
Colin J ChuAcademic Unit of Ophthalmology, Translational Health Sciences, University of Bristol, Bristol BS8 1TD, UK.ORCID 0000-0003-2088-8310
David A CoplandAcademic Unit of Ophthalmology, Translational Health Sciences, University of Bristol, Bristol BS8 1TD, UK.ORCID 0000-0003-4044-4952
Alexander J LetiziaWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0003-1960-3461
Helena Costa VerderaInserm U974, Sorbonne Universite, Paris 75651, France.ORCID 0000-0002-0750-2156
Jessica J ChiangWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0002-6987-8693
Meher SethiWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0002-8270-5420
May K WangAlly Therapeutics, Cambridge, MA 02139, USA.
William J NeidermyerAlly Therapeutics, Cambridge, MA 02139, USA.
Yingleong ChanWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0003-4474-6114
Elaine T LimWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.
Amanda R GravelineWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0002-2626-4093
Melinda SanchezWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0001-6420-1360
Ryan F BoydOphthalmology, Charles River Laboratories, Mattawan, MI 49071, USA.
Thomas S VihtelicOphthalmology, Charles River Laboratories, Mattawan, MI 49071, USA.
Rolando Gian Carlo O InciongStatistics and Data Science, Charles River Laboratories, Mattawan, MI 49071, USA.ORCID 0000-0001-5727-3550
Jared M SlainStatistics and Data Science, Charles River Laboratories, Mattawan, MI 49071, USA.ORCID 0000-0003-0665-5537
Priscilla J AlphonseInserm U974, Sorbonne Universite, Paris 75651, France.ORCID 0000-0003-2680-3023
Yunlu XueDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-2088-9826
Lindsey R Robinson-McCarthyWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0002-8066-2770
Jenny M TamWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0002-3767-7205
Maha H JabbarDepartment of Ophthalmology and Visual Sciences, University of Louisville, Louisville, KY 40202, USA.
Bhubanananda SahuDepartment of Ophthalmology and Visual Sciences, University of Louisville, Louisville, KY 40202, USA.
Janelle F AdeniranDepartment of Ophthalmology and Visual Sciences, University of Louisville, Louisville, KY 40202, USA.
Manish MuhuriHorae Gene Therapy Center, University of Massachusetts Medical School, Worcester, MA 01605, USA.ORCID 0000-0003-3265-903X
Phillip W L TaiHorae Gene Therapy Center, University of Massachusetts Medical School, Worcester, MA 01605, USA.ORCID 0000-0001-7409-8344
Jun XieHorae Gene Therapy Center, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Tyler B KrauseDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Andyna VernetWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0003-3875-5903
Matthew PezoneWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.
Ru XiaoGrousbeck Gene Therapy Center, Schepens Eye Research Institute and Massachusetts Eye and Ear Infirmary, Boston, MA 02115, USA.
Tina LiuWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.
Wei WangDepartment of Ophthalmology and Visual Sciences, University of Louisville, Louisville, KY 40202, USA.
Henry J KaplanDepartment of Ophthalmology and Visual Sciences, University of Louisville, Louisville, KY 40202, USA.ORCID 0000-0003-1799-5692
Guangping GaoHorae Gene Therapy Center, University of Massachusetts Medical School, Worcester, MA 01605, USA.ORCID 0000-0003-0097-9012
Andrew D DickAcademic Unit of Ophthalmology, Translational Health Sciences, University of Bristol, Bristol BS8 1TD, UK.
Federico MingozziInserm U974, Sorbonne Universite, Paris 75651, France.ORCID 0000-0003-0685-3752
Maureen A McCallDepartment of Ophthalmology and Visual Sciences, University of Louisville, Louisville, KY 40202, USA.ORCID 0000-0002-9781-315X
Constance L CepkoDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
George M ChurchWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA. gchurch@genetics.med.harvard.edu yingkai_chan@hms.harvard.edu.ORCID 0000-0002-0775-2913
Harvard University · USUniversity of Louisville · USCharles River Laboratories (United States) · USUniversity of Massachusetts Chan Medical School · USInserm · FRAlly Therapeutics (United States) · USUniversity of Bristol · GBHoward Hughes Medical Institute · USMassachusetts Eye and Ear Infirmary · USMoorfields Eye Hospital NHS Foundation Trust · GB

Funding

Center for Genomically Engineered OrgansRM1HG008525 · NHGRI · HARVARD MEDICAL SCHOOL · PI CHURCH, GEORGE M · 2015 to 2019
$10.2M
Cone Rescue in Retinitis PigmentosaR01EY026158 · NEI · UNIVERSITY OF LOUISVILLE · PI DEAN, DOUGLAS CHASE, MCCALL, MAUREEN A · 2016 to 2019
$2.4M
Investigation of the Mechanisms of Cone Degeneration in Retinitis PigmentosaK99EY030951 · NEI · HARVARD MEDICAL SCHOOL · PI XUE, YUNLU · 2020 to 2022
$242k
Howard Hughes Medical InstituteNEI NIH HHS K99 EY030951NEI NIH HHS R01 EY026158NHGRI NIH HHS RM1 HG008525
6 · The paper itself

Abstract

Nucleic acids are used in many therapeutic modalities, including gene therapy, but their ability to trigger host immune responses in vivo can lead to decreased safety and efficacy. In the case of adeno-associated viral (AAV) vectors, studies have shown that the genome of the vector activates Toll-like receptor 9 (TLR9), a pattern recognition receptor that senses foreign DNA. Here, we engineered AAV vectors to be intrinsically less immunogenic by incorporating short DNA oligonucleotides that antagonize TLR9 activation directly into the vector genome. The engineered vectors elicited markedly reduced innate immune and T cell responses and enhanced gene expression in clinically relevant mouse and pig models across different tissues, including liver, muscle, and retina. Subretinal administration of higher-dose AAV in pigs resulted in photoreceptor pathology with microglia and T cell infiltration. These adverse findings were avoided in the contralateral eyes of the same animals that were injected with the engineered vectors. However, intravitreal injection of higher-dose AAV in macaques, a more immunogenic route of administration, showed that the engineered vector delayed but did not prevent clinical uveitis, suggesting that other immune factors in addition to TLR9 may contribute to intraocular inflammation in this model. Our results demonstrate that linking specific immunomodulatory noncoding sequences to much longer therapeutic nucleic acids can "cloak" the vector from inducing unwanted immune responses in multiple, but not all, models. This "coupled immunomodulation" strategy may widen the therapeutic window for AAV therapies as well as other DNA-based gene transfer methods.

Indexed as

DependovirusGenetic VectorsAnimalsGenetic TherapyGene Transfer TechniquesImmunity, InnateMiceSwine

Identifiers

PMID33568518
PMCPMC8409505
OpenAlexW3126525679

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.