Evidence map›Paper›PMID 33568111›Full record

ArticleBMC infectious diseases2021

Molecular characterization of the viral structural protein genes in the first outbreak of dengue virus type 2 in Hunan Province, inland China in 2018.

Jiaoqiong Guan, Zhanlong He, Meng Qin, Xialin Deng, Jun Chen, Suqin Duan, Xiaojun Gao, Yue Pan, Junying Chen, Yaping Yang and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Jiaoqiong GuanInstitute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, People's Republic of China.
Zhanlong HeInstitute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, People's Republic of China.
Meng QinBeijing Advanced Innovation Center for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, People's Republic of China.
Xialin DengQiyang People's Hospital, Yongzhou, Hunan, People's Republic of China.
Jun ChenInstitute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, People's Republic of China.
Suqin DuanInstitute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, People's Republic of China.
Xiaojun GaoQiyang People's Hospital, Yongzhou, Hunan, People's Republic of China.
Yue PanInstitute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, People's Republic of China.
Junying ChenInstitute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, People's Republic of China.
Yaping YangInstitute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, People's Republic of China.
Shijun FengQiyang People's Hospital, Yongzhou, Hunan, People's Republic of China. fshijun@163.com.
Qiangming SunInstitute of Medical Biology, Chinese Academy of Medical Sciences, and Peking Union Medical College, Kunming, People's Republic of China. qsun@imbcams.com.cn.ORCID http://orcid.org/0000-0002-6786-049X
Chinese Academy of Medical Sciences & Peking Union Medical College · CNHunan Provincial People's Hospital · CNBeijing University of Chemical Technology · CNQihe People's Hospital · CN

Funding

Major Projects and Key Research and Development Plans of Yunnan Province 2019ZF004the CAMS (Chinese Academy of Medical Sciences) Initiative for Innovative Medicine 2016-I2M-1-019the National Natural Science Foundation of China 31970868the Natural Science Foundation of Yunnan Province 2016FA029
6 · The paper itself

Abstract

backgroundAn unexpected dengue outbreak occurred in Hunan Province in 2018. This was the first dengue outbreak in this area of inland China, and 172 cases were reported.

methodsTo verify the causative agent of this outbreak and characterise the viral genes, the genes encoding the structural proteins C/prM/E of viruses isolated from local residents were sequenced followed by mutation and phylogenetic analysis. Recombination, selection pressure, potential secondary structure and three-dimensional structure analyses were also performed.

resultsPhylogenetic analysis revealed that all epidemic strains were of the cosmopolitan DENV-2 genotype and were most closely related to the Zhejiang strain (MH010629, 2017) and then the Malaysia strain (KJ806803, 2013). Compared with the sequence of DENV-2SS, 151 base substitutions were found in the sequences of 89 isolates; these substitutions resulted in 20 non-synonymous mutations, of which 17 mutations existed in all samples (two in the capsid protein, six in the prM/M proteins, and nine in the envelope proteins). Moreover, amino acid substitutions at the 602nd (E322:Q → H) and 670th (E390: N → S) amino acids may have enhanced the virulence of the epidemic strains. One new DNA binding site and five new protein binding sites were observed. Two polynucleotide binding sites and seven protein binding sites were lost in the epidemic strains compared with DENV-2SS. Meanwhile, five changes were found in helical regions. Minor changes were observed in helical transmembrane and disordered regions. The 429th amino acid of the E protein switched from a histamine (positively charged) to an asparagine (neutral) in all 89 isolated strains. No recombination events or positive selection pressure sites were observed. To our knowledge, this study is the first to analyse the genetic characteristics of epidemic strains in the first dengue outbreak in Hunan Province in inland China.

conclusionsThe causative agent is likely to come from Zhejiang Province, a neighbouring province where dengue fever broke out in 2017. This study may help clarify the intrinsic geographical relatedness of DENV-2 and contribute to further research on pathogenicity and vaccine development.

Indexed as

Binding SitesCapsid ProteinsChinaDengueDengue VirusDisease OutbreaksGenotypeHumansMutationPhylogenyProtein Structure, TertiaryRNA, ViralSequence Analysis, RNAViral Envelope ProteinsViral Nonstructural ProteinsCapsid ProteinsE protein TH Sman, Dengue virusNS1 protein, Dengue virus type 2RNA, ViralViral Envelope ProteinsViral Nonstructural ProteinsDengue virusPhylogenetic treesProtein structureSelection pressureStructural protein

Identifiers

PMID33568111
PMCPMC7874035
OpenAlexW3118586158

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.