Evidence map›Paper›PMID 33567341›Full record

ArticleThe Journal of biological chemistry

USP11 mediates repair of DNA-protein cross-links by deubiquitinating SPRTN metalloprotease.

Megan Perry, Meghan Biegert, Sai Sundeep Kollala, Halle Mallard, Grace Su, Manohar Kodavati, Natasha Kreiling, Alexander Holbrook, Gargi Ghosal

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  9. Review
  10. ATAD5 functions as a regulatory platform for Ub-PCNA deubiquitination.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Review
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  15. Article
  16. Article
  17. Review
  18. Targeting DNA-Protein CrosslinksFrontiers in molecular biosciences · 2022
    Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Megan PerryDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, USA.
Meghan BiegertDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, USA.
Sai Sundeep KollalaDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, USA.
Halle MallardDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, USA.
Grace SuDepartment of Biology, Doane University, Crete, Nebraska, USA.
Manohar KodavatiDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas, USA.
Natasha KreilingDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, USA.
Alexander HolbrookDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, USA.
Gargi GhosalDepartment of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, USA; Fred and Pamela Buffett Cancer Center, Omaha Nebraska, USA. Electronic address: gargi.ghosal@unmc.edu.
University of Nebraska Medical Center · USDoane University · USHouston Methodist · USSusan Thompson Buffett Foundation · US

Funding

Target Validation CoreP20GM121316 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI ADRIAN R BLACK · 2018 to 2026
$23.5M
Regulation of SPRTN protease and SPRTN-mediated DNA-Protein Crosslink RepairR01GM141232 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI GHOSAL, GARGI · 2022 to 2025
$1.3M
Roles of Spartan in translesion synthesis and UV-induced carcinogenesisK22CA188181 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI GHOSAL, GARGI · 2016 to 2018
$402k
NCI NIH HHS K22 CA188181NIGMS NIH HHS P20 GM121316NIGMS NIH HHS R01 GM141232
6 · The paper itself

Abstract

DNA-protein cross-links (DPCs) are toxic DNA lesions that interfere with DNA metabolic processes such as replication, transcription, and recombination. USP11 deubiquitinase participates in DNA repair, but the role of USP11 in DPC repair is not known. SPRTN is a replication-coupled DNA-dependent metalloprotease that cleaves proteins cross-linked to DNA to promote DPC repair. SPRTN function is tightly regulated by a monoubiquitin switch that controls SPRTN auto-proteolysis and chromatin accessibility during DPC repair. Previously, VCPIP1 and USP7 deubiquitinases have been shown to regulate SPRTN. Here, we identify USP11 as an SPRTN deubiquitinase. USP11 interacts with SPRTN and cleaves monoubiquitinated SPRTN in cells and in vitro. USP11 depletion impairs SPRTN deubiquitination and promotes SPRTN auto-proteolysis in response to formaldehyde-induced DPCs. Loss of USP11 causes an accumulation of unrepaired DPCs and cellular hypersensitivity to treatment with DPC-inducing agents. Our findings show that USP11 regulates SPRTN auto-proteolysis and SPRTN-mediated DPC repair to maintain genome stability.

Indexed as

DNA RepairUbiquitinationCell LineCell Line, TumorChromatinCross-Linking ReagentsDNA-Binding ProteinsGenomic InstabilityHumansProteolysisThiolester HydrolasesChromatinCross-Linking ReagentsDNA-Binding ProteinsSPRTN protein, humanThiolester HydrolasesUSP11 protein, humandeubiquitinationDPCDPC repairmonoubiquitinated SPRTNSPRTNTOP1-ccsUSP11

Identifiers

PMID33567341
PMCPMC7960550
OpenAlexW3127374656

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.