Evidence map›Paper›PMID 33566841›Full record

ArticlePLoS computational biology2021

Unraveling ChR2-driven stochastic Ca2+ dynamics in astrocytes: A call for new interventional paradigms.

Arash Moshkforoush, Lakshmini Balachandar, Carolina Moncion, Karla A Montejo, Jorge Riera

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Arash MoshkforoushDepartment of Biomedical Engineering, Florida International University, Miami, Florida, United States of America.ORCID 0000-0003-4572-8911
Lakshmini BalachandarDepartment of Biomedical Engineering, Florida International University, Miami, Florida, United States of America.ORCID 0000-0003-4795-7355
Carolina MoncionDepartment of Biomedical Engineering, Florida International University, Miami, Florida, United States of America.ORCID 0000-0003-4865-2799
Karla A MontejoDepartment of Biomedical Engineering, Florida International University, Miami, Florida, United States of America.ORCID 0000-0002-6930-2045
Jorge RieraDepartment of Biomedical Engineering, Florida International University, Miami, Florida, United States of America.ORCID 0000-0001-8530-8431
Florida International University · USMayo Clinic · US

Funding

Post-baccalaureate Training in Biomedical ResearchR25GM075148 · NIGMS · MAYO CLINIC ROCHESTER · PI LUJAN, LUIS, MAHER, LOUIS JAMES · 2006 to 2024
$6.1M
In Vivo Fluorescent Microscopy Analysis of Motor Cortex Activation by STN DBSR01NS107336 · NINDS · MAYO CLINIC ROCHESTER · PI LUJAN, LUIS · 2018 to 2020
$1.1M
Novel method for classifying BOLD response mechanisms in focal epilepsyR56NS094784 · NINDS · FLORIDA INTERNATIONAL UNIVERSITY · PI RIERA DIAZ, JORGE · 2016 to 2016
$381k
NIGMS NIH HHS R25 GM075148NINDS NIH HHS R01 NS107336NINDS NIH HHS R56 NS094784
6 · The paper itself

Abstract

Optogenetic targeting of astrocytes provides a robust experimental model to differentially induce Ca2+ signals in astrocytes in vivo. However, a systematic study quantifying the response of optogenetically modified astrocytes to light is yet to be performed. Here, we propose a novel stochastic model of Ca2+ dynamics in astrocytes that incorporates a light sensitive component-channelrhodopsin 2 (ChR2). Utilizing this model, we investigated the effect of different light stimulation paradigms on cells expressing select variants of ChR2 (wild type, ChETA, and ChRET/TC). Results predict that depending on paradigm specification, astrocytes might undergo drastic changes in their basal Ca2+ level and spiking probability. Furthermore, we performed a global sensitivity analysis to assess the effect of variation in parameters pertinent to the shape of the ChR2 photocurrent on astrocytic Ca2+ dynamics. Results suggest that directing variants towards the first open state of the ChR2 photocycle (o1) enhances spiking activity in astrocytes during optical stimulation. Evaluation of the effect of Ca2+ buffering and coupling coefficient in a network of ChR2-expressing astrocytes demonstrated basal level elevations in the stimulated region and propagation of calcium activity to unstimulated cells. Buffering reduced the diffusion range of Ca2+ within the network, thereby limiting propagation and influencing the activity of astrocytes. Collectively, the framework presented in this study provides valuable information for the selection of light stimulation paradigms that elicit desired astrocytic activity using existing ChR2 constructs, as well as aids in the engineering of future application-oriented optogenetic variants.

Indexed as

Gene Expression RegulationAlgorithmsAnimalsAstrocytesBuffersCalciumChannelrhodopsinsComputational BiologyComputer SimulationKineticsLightNeuronsOptogeneticsPhotochemistryProbabilityStochastic ProcessesBuffersCalciumChannelrhodopsins

Identifiers

PMID33566841
PMCPMC7875401
OpenAlexW3127123345

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.