Evidence map›Paper›PMID 33566322›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2021

Characterization of multidrug-resistant avian pathogenic Escherichia coli: an outbreak in canaries.

Angela Hitomi Kimura, Vanessa Lumi Koga, Luís Eduardo de Souza Gazal, Benito Guimarães de Brito, Kelly Cristina Tagliari de Brito, Armando Navarro-Ocaña, Gerson Nakazato, Renata Katsuko Takayama Kobayashi

Open access · greenAbstract read
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Angela Hitomi KimuraDepartment of Microbiology, Laboratory of Basic and Applied Bacteriology, State University of Londrina, Rodovia Celso Garcia Cid, PR 445 Km 380, 86057-970, Londrina, Paraná, Brazil.
Vanessa Lumi KogaDepartment of Microbiology, Laboratory of Basic and Applied Bacteriology, State University of Londrina, Rodovia Celso Garcia Cid, PR 445 Km 380, 86057-970, Londrina, Paraná, Brazil.
Luís Eduardo de Souza GazalDepartment of Microbiology, Laboratory of Basic and Applied Bacteriology, State University of Londrina, Rodovia Celso Garcia Cid, PR 445 Km 380, 86057-970, Londrina, Paraná, Brazil.
Benito Guimarães de BritoAvian Health Laboratory, Agricultural Diagnosis and Research Department, Secretariat of Agriculture Livestock Rural Development, Veterinary Research Institute Desidério Finamor, Estrada Municipal do Conde, 6000, Eldorado do Sul, Rio Grande do Sul, 92990-000, Brazil.
Kelly Cristina Tagliari de BritoAvian Health Laboratory, Agricultural Diagnosis and Research Department, Secretariat of Agriculture Livestock Rural Development, Veterinary Research Institute Desidério Finamor, Estrada Municipal do Conde, 6000, Eldorado do Sul, Rio Grande do Sul, 92990-000, Brazil.
Armando Navarro-OcañaDepartment of Public Health, Faculty of Medicine, National Autonomous University of Mexico, 04510, Mexico City, Mexico.
Gerson NakazatoDepartment of Microbiology, Laboratory of Basic and Applied Bacteriology, State University of Londrina, Rodovia Celso Garcia Cid, PR 445 Km 380, 86057-970, Londrina, Paraná, Brazil.
Renata Katsuko Takayama KobayashiDepartment of Microbiology, Laboratory of Basic and Applied Bacteriology, State University of Londrina, Rodovia Celso Garcia Cid, PR 445 Km 380, 86057-970, Londrina, Paraná, Brazil. kobayashirkt@uel.br.ORCID http://orcid.org/0000-0001-7170-2155
Universidade Estadual de Londrina · BRUniversidad Nacional Autónoma de México · MX

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 433656/2018-2Coordenação de Aperfeiçoamento de Pessoal de Nível Superior Finance Code 001
6 · The paper itself

Abstract

The canary (Serinus canaria) is appreciated for its beautiful song, colors, and docile temperament and drives a lucrative business. However, diseases caused by avian pathogenic Escherichia coli (APEC) compromise the health of canaries, and the inadequate antimicrobial treatment can lead to the emergence of resistant strains. This study aimed to characterize 21 isolates of E. coli obtained from canaries infected with colibacillosis during an outbreak in northern Paraná State, Brazil. APEC and diarrheagenic E. coli (DEC) virulence genes were screened for by polymerase chain reaction (PCR). All isolates were positive for the hlyF, iss, and ompT genes, which are characteristic of APEC. The iroN gene was found in 95.2% of isolates, and none had the iutA gene. The ipaH gene, characteristic of enteroinvasive E. coli (EIEC), was found in 71.4% of isolates, all belonging to the phylogenetic group B1. High genetic similarity (>95%) was found using enterobacterial repetitive intergenic consensus PCR (ERIC-PCR). The isolates belonged to serotypes O117:H4 (71.4%) and O1:H20 (23.8%). This is the first report of a clonal colibacillosis outbreak in canaries caused by APEC. All isolates were resistant to ampicillin, nalidixic acid, ciprofloxacin, enrofloxacin, norfloxacin, and tetracycline. The high rate of multidrug resistance in our study shows the importance of avoiding the inadequate antibiotic treatment. We suggest that further studies should be conducted to contribute to the understanding of colibacillosis in canaries since the health of animals is linked to human and environmental health, as defined by the concept of One Health.

Indexed as

Disease OutbreaksDrug Resistance, Multiple, BacterialAnimalsAnti-Bacterial AgentsBrazilCanariesEscherichia coliEscherichia coli InfectionsGenes, BacterialGenotypeHeLa CellsHumansPhylogenyPoultry DiseasesSerogroupVirulence FactorsAnti-Bacterial AgentsVirulence FactorsAntimicrobial resistanceAvian pathogenic Escherichia coli (APEC)Colibacillosisenteroinvasive E. coli (EIEC)One HealthSerinus canaria

Identifiers

PMID33566322
PMCPMC8105445
OpenAlexW3128353735

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.